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PHF7 (PHD finger protein 7)

Identity

Alias_symbol (synonym)NYD-SP6
HSPC226
Other aliasHSPC045
HGNC (Hugo) PHF7
LocusID (NCBI) 51533
Atlas_Id 41704
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52410508 and ends at 52423641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHF7 (3p21.1) / PHF7 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF7   18458
Cards
Entrez_Gene (NCBI)PHF7  51533  PHD finger protein 7
AliasesHSPC045; HSPC226; NYD-SP6
GeneCards (Weizmann)PHF7
Ensembl hg19 (Hinxton)ENSG00000010318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010318 [Gene_View]  chr3:52410508-52423641 [Contig_View]  PHF7 [Vega]
ICGC DataPortalENSG00000010318
TCGA cBioPortalPHF7
AceView (NCBI)PHF7
Genatlas (Paris)PHF7
WikiGenes51533
SOURCE (Princeton)PHF7
Genetics Home Reference (NIH)PHF7
Genomic and cartography
GoldenPath hg38 (UCSC)PHF7  -     chr3:52410508-52423641 +  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF7  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblPHF7 - 3p21.1 [CytoView hg19]  PHF7 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBIPHF7 [Mapview hg19]  PHF7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151060 AK223531 AK292221 AL137671 AY014283
RefSeq transcript (Entrez)NM_001278221 NM_001321126 NM_001321127 NM_016483 NM_173341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF7
Cluster EST : UnigeneHs.372719 [ NCBI ]
CGAP (NCI)Hs.372719
Alternative Splicing GalleryENSG00000010318
Gene ExpressionPHF7 [ NCBI-GEO ]   PHF7 [ EBI - ARRAY_EXPRESS ]   PHF7 [ SEEK ]   PHF7 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51533
GTEX Portal (Tissue expression)PHF7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWX1
Splice isoforms : SwissVarQ9BWX1
PhosPhoSitePlusQ9BWX1
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_PHD    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF7
DMDM Disease mutations51533
Blocks (Seattle)PHF7
SuperfamilyQ9BWX1
Human Protein AtlasENSG00000010318
Peptide AtlasQ9BWX1
HPRD15127
IPIIPI00030906   IPI00943238   IPI01018710   IPI00334647   IPI00945280   IPI00945391   IPI00790200   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWX1
IntAct (EBI)Q9BWX1
FunCoupENSG00000010318
BioGRIDPHF7
STRING (EMBL)PHF7
ZODIACPHF7
Ontologies - Pathways
QuickGOQ9BWX1
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  Golgi apparatus  cytosol  plasma membrane  zinc ion binding  nuclear speck  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  Golgi apparatus  cytosol  plasma membrane  zinc ion binding  nuclear speck  
NDEx NetworkPHF7
Atlas of Cancer Signalling NetworkPHF7
Wikipedia pathwaysPHF7
Orthology - Evolution
OrthoDB51533
GeneTree (enSembl)ENSG00000010318
Phylogenetic Trees/Animal Genes : TreeFamPHF7
HOVERGENQ9BWX1
HOGENOMQ9BWX1
Homologs : HomoloGenePHF7
Homology/Alignments : Family Browser (UCSC)PHF7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF7
dbVarPHF7
ClinVarPHF7
1000_GenomesPHF7 
Exome Variant ServerPHF7
ExAC (Exome Aggregation Consortium)PHF7 (select the gene name)
Genetic variants : HAPMAP51533
Genomic Variants (DGV)PHF7 [DGVbeta]
DECIPHERPHF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF7 
Mutations
ICGC Data PortalPHF7 
TCGA Data PortalPHF7 
Broad Tumor PortalPHF7
OASIS PortalPHF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF7
DgiDB (Drug Gene Interaction Database)PHF7
DoCM (Curated mutations)PHF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF7 (select a term)
intoGenPHF7
Cancer3DPHF7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHF7
Genetic Testing Registry PHF7
NextProtQ9BWX1 [Medical]
TSGene51533
GENETestsPHF7
Target ValidationPHF7
Huge Navigator PHF7 [HugePedia]
snp3D : Map Gene to Disease51533
BioCentury BCIQPHF7
ClinGenPHF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51533
Chemical/Pharm GKB GenePA38541
Clinical trialPHF7
Miscellaneous
canSAR (ICR)PHF7 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF7
EVEXPHF7
GoPubMedPHF7
iHOPPHF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:19 CEST 2017

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