Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PHGR1 (proline/histidine/glycine-rich 1)

Identity

Alias_namesproline/histidine/glycine-rich 1
Other alias-
HGNC (Hugo) PHGR1
LocusID (NCBI) 644844
Atlas_Id 71886
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40643234 and ends at 40648634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DISP2 (15q15.1) / PHGR1 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHGR1   37226
Cards
Entrez_Gene (NCBI)PHGR1  644844  proline/histidine/glycine-rich 1
Aliases
GeneCards (Weizmann)PHGR1
Ensembl hg19 (Hinxton)ENSG00000233041 [Gene_View]  chr15:40643234-40648634 [Contig_View]  PHGR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000233041 [Gene_View]  chr15:40643234-40648634 [Contig_View]  PHGR1 [Vega]
ICGC DataPortalENSG00000233041
TCGA cBioPortalPHGR1
AceView (NCBI)PHGR1
Genatlas (Paris)PHGR1
WikiGenes644844
SOURCE (Princeton)PHGR1
Genetics Home Reference (NIH)PHGR1
Genomic and cartography
GoldenPath hg19 (UCSC)PHGR1  -     chr15:40643234-40648634 +  15q15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PHGR1  -     15q15.1   [Description]    (hg38-Dec_2013)
EnsemblPHGR1 - 15q15.1 [CytoView hg19]  PHGR1 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIPHGR1 [Mapview hg19]  PHGR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC052373 BC061640 BC070498 BC109367 BM854696
RefSeq transcript (Entrez)NM_001145643
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)PHGR1
Cluster EST : UnigeneHs.447537 [ NCBI ]
CGAP (NCI)Hs.447537
Alternative Splicing GalleryENSG00000233041
Gene ExpressionPHGR1 [ NCBI-GEO ]   PHGR1 [ EBI - ARRAY_EXPRESS ]   PHGR1 [ SEEK ]   PHGR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PHGR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644844
GTEX Portal (Tissue expression)PHGR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JFL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JFL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JFL3
Splice isoforms : SwissVarC9JFL3
PhosPhoSitePlusC9JFL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PHGR1
DMDM Disease mutations644844
Blocks (Seattle)PHGR1
SuperfamilyC9JFL3
Human Protein AtlasENSG00000233041
Peptide AtlasC9JFL3
IPIIPI00923540   IPI01013530   IPI00735719   
Protein Interaction databases
DIP (DOE-UCLA)C9JFL3
IntAct (EBI)C9JFL3
FunCoupENSG00000233041
BioGRIDPHGR1
STRING (EMBL)PHGR1
ZODIACPHGR1
Ontologies - Pathways
QuickGOC9JFL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPHGR1
Atlas of Cancer Signalling NetworkPHGR1
Wikipedia pathwaysPHGR1
Orthology - Evolution
OrthoDB644844
GeneTree (enSembl)ENSG00000233041
Phylogenetic Trees/Animal Genes : TreeFamPHGR1
HOVERGENC9JFL3
HOGENOMC9JFL3
Homologs : HomoloGenePHGR1
Homology/Alignments : Family Browser (UCSC)PHGR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHGR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHGR1
dbVarPHGR1
ClinVarPHGR1
1000_GenomesPHGR1 
Exome Variant ServerPHGR1
ExAC (Exome Aggregation Consortium)PHGR1 (select the gene name)
Genetic variants : HAPMAP644844
Genomic Variants (DGV)PHGR1 [DGVbeta]
DECIPHER (Syndromes)15:40643234-40648634  ENSG00000233041
CONAN: Copy Number AnalysisPHGR1 
Mutations
ICGC Data PortalPHGR1 
TCGA Data PortalPHGR1 
Broad Tumor PortalPHGR1
OASIS PortalPHGR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHGR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHGR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHGR1
DgiDB (Drug Gene Interaction Database)PHGR1
DoCM (Curated mutations)PHGR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHGR1 (select a term)
intoGenPHGR1
Cancer3DPHGR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHGR1
Genetic Testing Registry PHGR1
NextProtC9JFL3 [Medical]
TSGene644844
GENETestsPHGR1
Huge Navigator PHGR1 [HugePedia]
snp3D : Map Gene to Disease644844
BioCentury BCIQPHGR1
ClinGenPHGR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644844
Chemical/Pharm GKB GenePA165479224
Clinical trialPHGR1
Miscellaneous
canSAR (ICR)PHGR1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHGR1
EVEXPHGR1
GoPubMedPHGR1
iHOPPHGR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:38:32 CET 2017

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