Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PHKG2 (phosphorylase kinase, gamma 2 (testis))

Identity

Other namesGSD9C
HGNC (Hugo) PHKG2
LocusID (NCBI) 5261
Location 16p11.2
Location_base_pair Starts at 30759620 and ends at 30772497 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PHKG2   8931
Entrez_Gene (NCBI)PHKG2  5261  phosphorylase kinase, gamma 2 (testis)
Cards
GeneCards (Weizmann)PHKG2
Ensembl (Hinxton)ENSG00000156873 [Gene_View]  chr16:30759620-30772497 [Contig_View]  PHKG2 [Vega]
AceView (NCBI)PHKG2
Genatlas (Paris)PHKG2
SOURCE (Stanford)NM_000294 NM_001172432
Genomic and cartography
GoldenPath (UCSC)PHKG2  -  16p11.2   chr16:30759620-30772497 +  16p11.2   [Description]    (hg19-Feb_2009)
EnsemblPHKG2 - 16p11.2 [CytoView]
Mapping of homologs : NCBIPHKG2 [Mapview]
OMIM172471   613027   
Gene and transcription
Genbank (Entrez)AB209055 AK055943 AK289492 AK293551 BC002541
RefSeq transcript (SRS)NM_000294 NM_001172432
RefSeq transcript (Entrez)NM_000294 NM_001172432
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NG_016616 NT_010393 NW_001838236 NW_004078085
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_016616 NT_010393 NW_001838236 NW_004078085
Consensus coding sequences : CCDS (NCBI)PHKG2
Cluster EST : UnigeneHs.65735 [ SRS ] Hs.65735 [ NCBI ]
CGAP (NCI)Hs.65735
Alternative Splicing : Fast-db (Paris)GSHG0011118
Alternative Splicing GalleryENSG00000156873
Gene ExpressionPHKG2 [ NCBI-GEO ]   PHKG2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15735 (SRS) P15735 (Uniprot)
NextProtP15735
With graphics : InterProP15735
Splice isoforms : SwissVarP15735(Swissvar)
Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Phosph_kin_gamma    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase    Kinase-like_dom    Phosph_kin_gamma    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser/Thr_dual-sp_kinase_dom    Ser/Thr_kinase_AS   
Related proteins : CluSTrP15735
Domain families : Pfam (SRS)Pkinase (PF00069)   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
DMDM5261
Blocks (Seattle)P15735
PDB (SRS)2Y7J   
PDB (PDBSum)2Y7J   
PDB (IMB)2Y7J   
PDB (RSDB)2Y7J   
Human Protein AtlasENSG00000156873
HPRD01405
IPIIPI00012891   IPI00514007   IPI00956068   
Protein Interaction databases
DIP (DOE-UCLA)P15735
IntAct (EBI)P15735
FunCoupENSG00000156873
REACTOMEPHKG2
Protein Interaction Database5261
BioGRIDPHKG2
InParanoidP15735
Interologous Interaction database P15735
IntegromeDBPHKG2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PHKG2
SNP (GeneSNP Utah)PHKG2
SNP : HGBasePHKG2
Genetic variants : HAPMAPPHKG2
Somatic Mutations in Cancer : COSMICPHKG2 
CONAN: Copy Number AnalysisPHKG2 
Mutations and Diseases : HGMDPHKG2
OMIM172471    613027   
GENETests172471    613027   
Disease Genetic AssociationPHKG2
Huge Navigator PHKG2 [HugePedia]  PHKG2 [HugeCancerGEM]
Genomic VariantsPHKG2  PHKG2 [DGVbeta]
ClinVarPHKG2
snp3D : Map Gene to Disease5261
General knowledge
Homologs : HomoloGenePHKG2
Homology/Alignments : Family Browser (UCSC)PHKG2
Phylogenetic Trees/Animal Genes : TreeFamPHKG2
Catalytic activity : Enzyme2.7.11.19 [ Enzyme-Expasy ]   2.7.11.19 [ Enzyme-SRS ]   2.7.11.19 [ IntEnz-EBI ]   2.7.11.19 [ BRENDA ]   2.7.11.19 [ KEGG ]   
Chemical/Protein Interactions : CTD5261
Chemical/Pharm GKB GenePA33272
Clinical trialPHKG2
Cancer Resource (Charite)ENSG00000156873
Ontology : AmiGOprotein serine/threonine kinase activity  protein serine/threonine kinase activity  phosphorylase kinase activity  calmodulin binding  ATP binding  cellular_component  cytosol  phosphorylase kinase complex  carbohydrate metabolic process  glycogen metabolic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  generation of precursor metabolites and energy  protein phosphorylation  small molecule metabolic process  positive regulation of glycogen catabolic process  tau-protein kinase activity  
Ontology : EGO-EBIprotein serine/threonine kinase activity  protein serine/threonine kinase activity  phosphorylase kinase activity  calmodulin binding  ATP binding  cellular_component  cytosol  phosphorylase kinase complex  carbohydrate metabolic process  glycogen metabolic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  generation of precursor metabolites and energy  protein phosphorylation  small molecule metabolic process  positive regulation of glycogen catabolic process  tau-protein kinase activity  
Pathways : KEGGInsulin signaling pathwayCalcium signaling pathway
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGenePHKG2
iHOPPHKG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 18:00:54 CEST 2013
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