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PHKG2 (phosphorylase kinase, gamma 2 (testis))

Identity

Other namesGSD9C
HGNC (Hugo) PHKG2
LocusID (NCBI) 5261
Location 16p11.2
Location_base_pair Starts at 30759620 and ends at 30772497 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PHKG2   8931
Cards
Entrez_Gene (NCBI)PHKG2  5261  phosphorylase kinase, gamma 2 (testis)
GeneCards (Weizmann)PHKG2
Ensembl (Hinxton)ENSG00000156873 [Gene_View]  chr16:30759620-30772497 [Contig_View]  PHKG2 [Vega]
ICGC DataPortalENSG00000156873
cBioPortalPHKG2
AceView (NCBI)PHKG2
Genatlas (Paris)PHKG2
WikiGenes5261
SOURCE (Princeton)NM_000294 NM_001172432
Genomic and cartography
GoldenPath (UCSC)PHKG2  -  16p11.2   chr16:30759620-30772497 +  16p11.2   [Description]    (hg19-Feb_2009)
EnsemblPHKG2 - 16p11.2 [CytoView]
Mapping of homologs : NCBIPHKG2 [Mapview]
OMIM172471   613027   
Gene and transcription
Genbank (Entrez)AB209055 AK055943 AK289492 AK293551 BC002541
RefSeq transcript (Entrez)NM_000294 NM_001172432
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_016616 NT_187260 NW_001838236 NW_004929400
Consensus coding sequences : CCDS (NCBI)PHKG2
Cluster EST : UnigeneHs.65735 [ NCBI ]
CGAP (NCI)Hs.65735
Alternative Splicing : Fast-db (Paris)GSHG0011118
Alternative Splicing GalleryENSG00000156873
Gene ExpressionPHKG2 [ NCBI-GEO ]     PHKG2 [ SEEK ]   PHKG2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15735 (Uniprot)
NextProtP15735  [Medical]
With graphics : InterProP15735
Splice isoforms : SwissVarP15735 (Swissvar)
Catalytic activity : Enzyme2.7.11.19 [ Enzyme-Expasy ]   2.7.11.192.7.11.19 [ IntEnz-EBI ]   2.7.11.19 [ BRENDA ]   2.7.11.19 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Ca/CaM-dep_Ca-dep_prot_Kinase [organisation]   Kinase-like_dom [organisation]   Phosph_kin_gamma [organisation]   Prot_kinase_dom [organisation]   Protein_kinase_ATP_BS [organisation]   Ser/Thr_dual-sp_kinase_dom [organisation]   Ser/Thr_kinase_AS [organisation]  
Related proteins : CluSTrP15735
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
DMDM Disease mutations5261
Blocks (Seattle)P15735
PDB (SRS)2Y7J   
PDB (PDBSum)2Y7J   
PDB (IMB)2Y7J   
PDB (RSDB)2Y7J   
Human Protein AtlasENSG00000156873 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP15735
HPRD01405
IPIIPI00012891   IPI00514007   IPI00956068   
Protein Interaction databases
DIP (DOE-UCLA)P15735
IntAct (EBI)P15735
FunCoupENSG00000156873
BioGRIDPHKG2
InParanoidP15735
Interologous Interaction database P15735
IntegromeDBPHKG2
STRING (EMBL)PHKG2
Ontologies - Pathways
Ontology : AmiGOprotein serine/threonine kinase activity  phosphorylase kinase activity  calmodulin binding  ATP binding  cellular_component  cytosol  phosphorylase kinase complex  carbohydrate metabolic process  glycogen metabolic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  generation of precursor metabolites and energy  protein phosphorylation  small molecule metabolic process  positive regulation of glycogen catabolic process  tau-protein kinase activity  
Ontology : EGO-EBIprotein serine/threonine kinase activity  phosphorylase kinase activity  calmodulin binding  ATP binding  cellular_component  cytosol  phosphorylase kinase complex  carbohydrate metabolic process  glycogen metabolic process  glycogen biosynthetic process  glycogen catabolic process  glucose metabolic process  generation of precursor metabolites and energy  protein phosphorylation  small molecule metabolic process  positive regulation of glycogen catabolic process  tau-protein kinase activity  
Pathways : KEGGCalcium signaling pathway    Insulin signaling pathway   
Protein Interaction DatabasePHKG2
Wikipedia pathwaysPHKG2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PHKG2
snp3D : Map Gene to Disease5261
SNP (GeneSNP Utah)PHKG2
SNP : HGBasePHKG2
Genetic variants : HAPMAPPHKG2
Exome VariantPHKG2
1000_GenomesPHKG2 
ICGC programENSG00000156873 
Somatic Mutations in Cancer : COSMICPHKG2 
CONAN: Copy Number AnalysisPHKG2 
Mutations and Diseases : HGMDPHKG2
Genomic VariantsPHKG2  PHKG2 [DGVbeta]
dbVarPHKG2
ClinVarPHKG2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM172471    613027   
MedgenPHKG2
GENETestsPHKG2
Disease Genetic AssociationPHKG2
Huge Navigator PHKG2 [HugePedia]  PHKG2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePHKG2
Homology/Alignments : Family Browser (UCSC)PHKG2
Phylogenetic Trees/Animal Genes : TreeFamPHKG2
Chemical/Protein Interactions : CTD5261
Chemical/Pharm GKB GenePA33272
Clinical trialPHKG2
Cancer Resource (Charite)ENSG00000156873
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMinePHKG2
iHOPPHKG2
OncoSearchPHKG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:09:42 CEST 2014

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