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PHLDA2 (pleckstrin homology-like domain, family A, member 2)

Identity

Other namesBRW1C
BWR1C
HLDA2
IPL
TSSC3
HGNC (Hugo) PHLDA2
LocusID (NCBI) 7262
Location 11p15.4
Location_base_pair Starts at 2949503 and ends at 2950650 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PHLDA2   12385
Entrez_Gene (NCBI)PHLDA2  7262  pleckstrin homology-like domain, family A, member 2
Cards
GeneCards (Weizmann)PHLDA2
Ensembl (Hinxton)ENSG00000181649 [Gene_View]  chr11:2949503-2950650 [Contig_View]  PHLDA2 [Vega]
AceView (NCBI)PHLDA2
Genatlas (Paris)PHLDA2
SOURCE (Stanford)NM_003311
Genomic and cartography
GoldenPath (UCSC)PHLDA2  -  11p15.4   chr11:2949503-2950650 -  11p15.4   [Description]    (hg19-Feb_2009)
EnsemblPHLDA2 - 11p15.4 [CytoView]
Mapping of homologs : NCBIPHLDA2 [Mapview]
OMIM602131   
Gene and transcription
Genbank (Entrez)AF001294 AF019953 AF035444 AI659266 AK223027
RefSeq transcript (SRS)NM_003311
RefSeq transcript (Entrez)NM_003311
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NG_009266 NT_009237 NW_001838018 NW_004078070
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_009266 NT_009237 NW_001838018 NW_004078070
Consensus coding sequences : CCDS (NCBI)PHLDA2
Cluster EST : UnigeneHs.154036 [ SRS ] Hs.154036 [ NCBI ]
CGAP (NCI)Hs.154036
Alternative Splicing : Fast-db (Paris)GSHG0005481
Alternative Splicing GalleryENSG00000181649
Gene ExpressionPHLDA2 [ NCBI-GEO ]   PHLDA2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53GA4 (SRS) Q53GA4 (Uniprot)
NextProtQ53GA4
With graphics : InterProQ53GA4
Splice isoforms : SwissVarQ53GA4(Swissvar)
Domaine pattern : Prosite (SRS)PH_DOMAIN (PS50003)   
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (SRS)PH_like_dom    Pleckstrin_homology   
Domains : Interpro (EBI)PH_like_dom    Pleckstrin_homology   
Related proteins : CluSTrQ53GA4
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PH (SM00233)  
DMDM7262
Blocks (Seattle)Q53GA4
Human Protein AtlasENSG00000181649
HPRD03679
IPIIPI00019551   
Protein Interaction databases
DIP (DOE-UCLA)Q53GA4
IntAct (EBI)Q53GA4
FunCoupENSG00000181649
REACTOMEPHLDA2
Protein Interaction Database7262
BioGRIDPHLDA2
InParanoidQ53GA4
Interologous Interaction database Q53GA4
IntegromeDBPHLDA2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PHLDA2
SNP (GeneSNP Utah)PHLDA2
SNP : HGBasePHLDA2
Genetic variants : HAPMAPPHLDA2
Somatic Mutations in Cancer : COSMICPHLDA2 
CONAN: Copy Number AnalysisPHLDA2 
Mutations and Diseases : HGMDPHLDA2
OMIM602131   
GENETests602131   
Disease Genetic AssociationPHLDA2
Huge Navigator PHLDA2 [HugePedia]  PHLDA2 [HugeCancerGEM]
Genomic VariantsPHLDA2  PHLDA2 [DGVbeta]
snp3D : Map Gene to Disease7262
General knowledge
Homologs : HomoloGenePHLDA2
Homology/Alignments : Family Browser (UCSC)PHLDA2
Phylogenetic Trees/Animal Genes : TreeFamPHLDA2
Chemical/Protein Interactions : CTD7262
Chemical/Pharm GKB GenePA37053
Clinical trialPHLDA2
Cancer Resource (Charite)ENSG00000181649
Ontology : AmiGOphospholipid binding  cytoplasm  apoptotic process  organ morphogenesis  membrane  
Ontology : EGO-EBIphospholipid binding  cytoplasm  apoptotic process  organ morphogenesis  membrane  
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGenePHLDA2
iHOPPHLDA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:58 CEST 2013
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