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PHLDB3 (pleckstrin homology like domain family B member 3)

Identity

Alias_namespleckstrin homology-like domain, family B, member 3
Alias_symbol (synonym)FLJ40193
Other alias-
HGNC (Hugo) PHLDB3
LocusID (NCBI) 653583
Atlas_Id 71890
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43475103 and ends at 43504833 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHLDB3   30499
Cards
Entrez_Gene (NCBI)PHLDB3  653583  pleckstrin homology like domain family B member 3
Aliases
GeneCards (Weizmann)PHLDB3
Ensembl hg19 (Hinxton)ENSG00000176531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176531 [Gene_View]  chr19:43475103-43504833 [Contig_View]  PHLDB3 [Vega]
ICGC DataPortalENSG00000176531
TCGA cBioPortalPHLDB3
AceView (NCBI)PHLDB3
Genatlas (Paris)PHLDB3
WikiGenes653583
SOURCE (Princeton)PHLDB3
Genetics Home Reference (NIH)PHLDB3
Genomic and cartography
GoldenPath hg38 (UCSC)PHLDB3  -     chr19:43475103-43504833 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHLDB3  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPHLDB3 - 19q13.31 [CytoView hg19]  PHLDB3 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPHLDB3 [Mapview hg19]  PHLDB3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA621318 AK097512 BC007947 BC029299 BC070094
RefSeq transcript (Entrez)NM_198850
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHLDB3
Cluster EST : UnigeneHs.631581 [ NCBI ]
CGAP (NCI)Hs.631581
Alternative Splicing GalleryENSG00000176531
Gene ExpressionPHLDB3 [ NCBI-GEO ]   PHLDB3 [ EBI - ARRAY_EXPRESS ]   PHLDB3 [ SEEK ]   PHLDB3 [ MEM ]
Gene Expression Viewer (FireBrowse)PHLDB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653583
GTEX Portal (Tissue expression)PHLDB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NSJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NSJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NSJ2
Splice isoforms : SwissVarQ6NSJ2
PhosPhoSitePlusQ6NSJ2
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)PHLDB3
DMDM Disease mutations653583
Blocks (Seattle)PHLDB3
SuperfamilyQ6NSJ2
Human Protein AtlasENSG00000176531
Peptide AtlasQ6NSJ2
IPIIPI00879509   IPI00394794   
Protein Interaction databases
DIP (DOE-UCLA)Q6NSJ2
IntAct (EBI)Q6NSJ2
FunCoupENSG00000176531
BioGRIDPHLDB3
STRING (EMBL)PHLDB3
ZODIACPHLDB3
Ontologies - Pathways
QuickGOQ6NSJ2
Ontology : AmiGOenzyme binding  
Ontology : EGO-EBIenzyme binding  
NDEx NetworkPHLDB3
Atlas of Cancer Signalling NetworkPHLDB3
Wikipedia pathwaysPHLDB3
Orthology - Evolution
OrthoDB653583
GeneTree (enSembl)ENSG00000176531
Phylogenetic Trees/Animal Genes : TreeFamPHLDB3
HOVERGENQ6NSJ2
HOGENOMQ6NSJ2
Homologs : HomoloGenePHLDB3
Homology/Alignments : Family Browser (UCSC)PHLDB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHLDB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHLDB3
dbVarPHLDB3
ClinVarPHLDB3
1000_GenomesPHLDB3 
Exome Variant ServerPHLDB3
ExAC (Exome Aggregation Consortium)PHLDB3 (select the gene name)
Genetic variants : HAPMAP653583
Genomic Variants (DGV)PHLDB3 [DGVbeta]
DECIPHERPHLDB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHLDB3 
Mutations
ICGC Data PortalPHLDB3 
TCGA Data PortalPHLDB3 
Broad Tumor PortalPHLDB3
OASIS PortalPHLDB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHLDB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHLDB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHLDB3
DgiDB (Drug Gene Interaction Database)PHLDB3
DoCM (Curated mutations)PHLDB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHLDB3 (select a term)
intoGenPHLDB3
Cancer3DPHLDB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHLDB3
Genetic Testing Registry PHLDB3
NextProtQ6NSJ2 [Medical]
TSGene653583
GENETestsPHLDB3
Target ValidationPHLDB3
Huge Navigator PHLDB3 [HugePedia]
snp3D : Map Gene to Disease653583
BioCentury BCIQPHLDB3
ClinGenPHLDB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653583
Chemical/Pharm GKB GenePA134934874
Clinical trialPHLDB3
Miscellaneous
canSAR (ICR)PHLDB3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHLDB3
EVEXPHLDB3
GoPubMedPHLDB3
iHOPPHLDB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:29 CEST 2017

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