Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PHOSPHO2-KLHL23 (PHOSPHO2-KLHL23 readthrough)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100526832
Atlas_Id 71893
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 170550964 and ends at 170608396 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)PHOSPHO2-KLHL23  100526832  PHOSPHO2-KLHL23 readthrough
Aliases
GeneCards (Weizmann)PHOSPHO2-KLHL23
Ensembl hg19 (Hinxton) [Gene_View]  chr2:170550964-170608396 [Contig_View]  PHOSPHO2-KLHL23 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:170550964-170608396 [Contig_View]  PHOSPHO2-KLHL23 [Vega]
TCGA cBioPortalPHOSPHO2-KLHL23
AceView (NCBI)PHOSPHO2-KLHL23
Genatlas (Paris)PHOSPHO2-KLHL23
WikiGenes100526832
SOURCE (Princeton)PHOSPHO2-KLHL23
Genetics Home Reference (NIH)PHOSPHO2-KLHL23
Genomic and cartography
GoldenPath hg19 (UCSC)PHOSPHO2-KLHL23  -     chr2:170550964-170608396 +  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PHOSPHO2-KLHL23  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblPHOSPHO2-KLHL23 - 2q31.1 [CytoView hg19]  PHOSPHO2-KLHL23 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIPHOSPHO2-KLHL23 [Mapview hg19]  PHOSPHO2-KLHL23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090653 AX746559
RefSeq transcript (Entrez)NM_001199290
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)PHOSPHO2-KLHL23
Cluster EST : UnigeneHs.655150 [ NCBI ]
CGAP (NCI)Hs.655150
Gene ExpressionPHOSPHO2-KLHL23 [ NCBI-GEO ]   PHOSPHO2-KLHL23 [ EBI - ARRAY_EXPRESS ]   PHOSPHO2-KLHL23 [ SEEK ]   PHOSPHO2-KLHL23 [ MEM ]
Gene Expression Viewer (FireBrowse)PHOSPHO2-KLHL23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100526832
GTEX Portal (Tissue expression)PHOSPHO2-KLHL23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBE8
Splice isoforms : SwissVarQ8NBE8
PhosPhoSitePlusQ8NBE8
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Gal_Oxidase_b-propeller    Kelch_1    KLHL23   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)PHOSPHO2-KLHL23
DMDM Disease mutations100526832
Blocks (Seattle)PHOSPHO2-KLHL23
SuperfamilyQ8NBE8
Peptide AtlasQ8NBE8
IPIIPI00062213   IPI00655935   IPI00917490   IPI00917923   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBE8
IntAct (EBI)Q8NBE8
BioGRIDPHOSPHO2-KLHL23
STRING (EMBL)PHOSPHO2-KLHL23
ZODIACPHOSPHO2-KLHL23
Ontologies - Pathways
QuickGOQ8NBE8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPHOSPHO2-KLHL23
Atlas of Cancer Signalling NetworkPHOSPHO2-KLHL23
Wikipedia pathwaysPHOSPHO2-KLHL23
Orthology - Evolution
OrthoDB100526832
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ8NBE8
HOGENOMQ8NBE8
Homologs : HomoloGenePHOSPHO2-KLHL23
Homology/Alignments : Family Browser (UCSC)PHOSPHO2-KLHL23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHOSPHO2-KLHL23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHOSPHO2-KLHL23
dbVarPHOSPHO2-KLHL23
ClinVarPHOSPHO2-KLHL23
1000_GenomesPHOSPHO2-KLHL23 
Exome Variant ServerPHOSPHO2-KLHL23
ExAC (Exome Aggregation Consortium)PHOSPHO2-KLHL23 (select the gene name)
Genetic variants : HAPMAP100526832
Genomic Variants (DGV)PHOSPHO2-KLHL23 [DGVbeta]
DECIPHER (Syndromes)2:170550964-170608396  
CONAN: Copy Number AnalysisPHOSPHO2-KLHL23 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch PHOSPHO2-KLHL23
DgiDB (Drug Gene Interaction Database)PHOSPHO2-KLHL23
DoCM (Curated mutations)PHOSPHO2-KLHL23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHOSPHO2-KLHL23 (select a term)
intoGenPHOSPHO2-KLHL23
Cancer3DPHOSPHO2-KLHL23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHOSPHO2-KLHL23
Genetic Testing Registry PHOSPHO2-KLHL23
NextProtQ8NBE8 [Medical]
TSGene100526832
GENETestsPHOSPHO2-KLHL23
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100526832
BioCentury BCIQPHOSPHO2-KLHL23
ClinGenPHOSPHO2-KLHL23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526832
Clinical trialPHOSPHO2-KLHL23
Miscellaneous
canSAR (ICR)PHOSPHO2-KLHL23 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHOSPHO2-KLHL23
EVEXPHOSPHO2-KLHL23
GoPubMedPHOSPHO2-KLHL23
iHOPPHOSPHO2-KLHL23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:38:34 CET 2017

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