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PHOSPHO2 (phosphatase, orphan 2)

Identity

Alias_symbol (synonym)MGC22679
Other alias-
HGNC (Hugo) PHOSPHO2
LocusID (NCBI) 493911
Atlas_Id 71892
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 169694454 and ends at 169701708 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHOSPHO2   28316
Cards
Entrez_Gene (NCBI)PHOSPHO2  493911  phosphatase, orphan 2
Aliases
GeneCards (Weizmann)PHOSPHO2
Ensembl hg19 (Hinxton)ENSG00000144362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144362 [Gene_View]  chr2:169694454-169701708 [Contig_View]  PHOSPHO2 [Vega]
ICGC DataPortalENSG00000144362
TCGA cBioPortalPHOSPHO2
AceView (NCBI)PHOSPHO2
Genatlas (Paris)PHOSPHO2
WikiGenes493911
SOURCE (Princeton)PHOSPHO2
Genetics Home Reference (NIH)PHOSPHO2
Genomic and cartography
GoldenPath hg38 (UCSC)PHOSPHO2  -     chr2:169694454-169701708 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHOSPHO2  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblPHOSPHO2 - 2q31.1 [CytoView hg19]  PHOSPHO2 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIPHOSPHO2 [Mapview hg19]  PHOSPHO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK314915 BC022324 BC106013 BI550291 BM820383
RefSeq transcript (Entrez)NM_001008489 NM_001199285 NM_001199286 NM_001199287 NM_001199288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHOSPHO2
Cluster EST : UnigeneHs.745233 [ NCBI ]
CGAP (NCI)Hs.745233
Alternative Splicing GalleryENSG00000144362
Gene ExpressionPHOSPHO2 [ NCBI-GEO ]   PHOSPHO2 [ EBI - ARRAY_EXPRESS ]   PHOSPHO2 [ SEEK ]   PHOSPHO2 [ MEM ]
Gene Expression Viewer (FireBrowse)PHOSPHO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493911
GTEX Portal (Tissue expression)PHOSPHO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCD6
Splice isoforms : SwissVarQ8TCD6
PhosPhoSitePlusQ8TCD6
Domains : Interpro (EBI)HAD-like_dom    Pase_PHOSPHO-typ    PyrdxlP_Pase-rel   
Domain families : Pfam (Sanger)Put_Phosphatase (PF06888)   
Domain families : Pfam (NCBI)pfam06888   
Conserved Domain (NCBI)PHOSPHO2
DMDM Disease mutations493911
Blocks (Seattle)PHOSPHO2
SuperfamilyQ8TCD6
Human Protein AtlasENSG00000144362
Peptide AtlasQ8TCD6
HPRD17848
IPIIPI00152344   IPI00916335   IPI00916475   IPI00917836   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCD6
IntAct (EBI)Q8TCD6
FunCoupENSG00000144362
BioGRIDPHOSPHO2
STRING (EMBL)PHOSPHO2
ZODIACPHOSPHO2
Ontologies - Pathways
QuickGOQ8TCD6
Ontology : AmiGOprotein binding  dephosphorylation  phosphatase activity  pyridoxal phosphatase activity  metal ion binding  
Ontology : EGO-EBIprotein binding  dephosphorylation  phosphatase activity  pyridoxal phosphatase activity  metal ion binding  
Pathways : KEGGVitamin B6 metabolism   
NDEx NetworkPHOSPHO2
Atlas of Cancer Signalling NetworkPHOSPHO2
Wikipedia pathwaysPHOSPHO2
Orthology - Evolution
OrthoDB493911
GeneTree (enSembl)ENSG00000144362
Phylogenetic Trees/Animal Genes : TreeFamPHOSPHO2
HOVERGENQ8TCD6
HOGENOMQ8TCD6
Homologs : HomoloGenePHOSPHO2
Homology/Alignments : Family Browser (UCSC)PHOSPHO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHOSPHO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHOSPHO2
dbVarPHOSPHO2
ClinVarPHOSPHO2
1000_GenomesPHOSPHO2 
Exome Variant ServerPHOSPHO2
ExAC (Exome Aggregation Consortium)PHOSPHO2 (select the gene name)
Genetic variants : HAPMAP493911
Genomic Variants (DGV)PHOSPHO2 [DGVbeta]
DECIPHERPHOSPHO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHOSPHO2 
Mutations
ICGC Data PortalPHOSPHO2 
TCGA Data PortalPHOSPHO2 
Broad Tumor PortalPHOSPHO2
OASIS PortalPHOSPHO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHOSPHO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHOSPHO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHOSPHO2
DgiDB (Drug Gene Interaction Database)PHOSPHO2
DoCM (Curated mutations)PHOSPHO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHOSPHO2 (select a term)
intoGenPHOSPHO2
Cancer3DPHOSPHO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHOSPHO2
Genetic Testing Registry PHOSPHO2
NextProtQ8TCD6 [Medical]
TSGene493911
GENETestsPHOSPHO2
Target ValidationPHOSPHO2
Huge Navigator PHOSPHO2 [HugePedia]
snp3D : Map Gene to Disease493911
BioCentury BCIQPHOSPHO2
ClinGenPHOSPHO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493911
Chemical/Pharm GKB GenePA134947617
Clinical trialPHOSPHO2
Miscellaneous
canSAR (ICR)PHOSPHO2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHOSPHO2
EVEXPHOSPHO2
GoPubMedPHOSPHO2
iHOPPHOSPHO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:36:17 CEST 2017

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