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PHTF1 (putative homeodomain transcription factor 1)

Identity

Alias_namesPHTF
Other alias
HGNC (Hugo) PHTF1
LocusID (NCBI) 10745
Atlas_Id 71894
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 113697205 and ends at 113759540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHTF1 (1p13.2) / TTLL7 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHTF1   8939
Cards
Entrez_Gene (NCBI)PHTF1  10745  putative homeodomain transcription factor 1
AliasesPHTF
GeneCards (Weizmann)PHTF1
Ensembl hg19 (Hinxton)ENSG00000116793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116793 [Gene_View]  chr1:113697205-113759540 [Contig_View]  PHTF1 [Vega]
ICGC DataPortalENSG00000116793
TCGA cBioPortalPHTF1
AceView (NCBI)PHTF1
Genatlas (Paris)PHTF1
WikiGenes10745
SOURCE (Princeton)PHTF1
Genetics Home Reference (NIH)PHTF1
Genomic and cartography
GoldenPath hg38 (UCSC)PHTF1  -     chr1:113697205-113759540 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHTF1  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblPHTF1 - 1p13.2 [CytoView hg19]  PHTF1 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIPHTF1 [Mapview hg19]  PHTF1 [Mapview hg38]
OMIM604950   
Gene and transcription
Genbank (Entrez)AJ011863 AK126773 AK294749 BC000842 BC002447
RefSeq transcript (Entrez)NM_001323041 NM_001323042 NM_001323043 NM_001323044 NM_001323045 NM_001323046 NM_001323047 NM_001323048 NM_001323049 NM_001323050 NM_001323051 NM_001323052 NM_001323053 NM_006608
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHTF1
Cluster EST : UnigeneHs.655824 [ NCBI ]
CGAP (NCI)Hs.655824
Alternative Splicing GalleryENSG00000116793
Gene ExpressionPHTF1 [ NCBI-GEO ]   PHTF1 [ EBI - ARRAY_EXPRESS ]   PHTF1 [ SEEK ]   PHTF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PHTF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10745
GTEX Portal (Tissue expression)PHTF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UMS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UMS5
Splice isoforms : SwissVarQ9UMS5
PhosPhoSitePlusQ9UMS5
Domains : Interpro (EBI)TF_homeodomain_male   
Domain families : Pfam (Sanger)Phtf-FEM1B_bdg (PF12129)   
Domain families : Pfam (NCBI)pfam12129   
Conserved Domain (NCBI)PHTF1
DMDM Disease mutations10745
Blocks (Seattle)PHTF1
SuperfamilyQ9UMS5
Human Protein AtlasENSG00000116793
Peptide AtlasQ9UMS5
HPRD09227
IPIIPI00008632   IPI00220044   IPI00909861   IPI00386845   IPI00480198   IPI00643376   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMS5
IntAct (EBI)Q9UMS5
FunCoupENSG00000116793
BioGRIDPHTF1
STRING (EMBL)PHTF1
ZODIACPHTF1
Ontologies - Pathways
QuickGOQ9UMS5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  endoplasmic reticulum  cis-Golgi network  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  endoplasmic reticulum  cis-Golgi network  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkPHTF1
Atlas of Cancer Signalling NetworkPHTF1
Wikipedia pathwaysPHTF1
Orthology - Evolution
OrthoDB10745
GeneTree (enSembl)ENSG00000116793
Phylogenetic Trees/Animal Genes : TreeFamPHTF1
HOVERGENQ9UMS5
HOGENOMQ9UMS5
Homologs : HomoloGenePHTF1
Homology/Alignments : Family Browser (UCSC)PHTF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHTF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHTF1
dbVarPHTF1
ClinVarPHTF1
1000_GenomesPHTF1 
Exome Variant ServerPHTF1
ExAC (Exome Aggregation Consortium)PHTF1 (select the gene name)
Genetic variants : HAPMAP10745
Genomic Variants (DGV)PHTF1 [DGVbeta]
DECIPHERPHTF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHTF1 
Mutations
ICGC Data PortalPHTF1 
TCGA Data PortalPHTF1 
Broad Tumor PortalPHTF1
OASIS PortalPHTF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHTF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHTF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHTF1
DgiDB (Drug Gene Interaction Database)PHTF1
DoCM (Curated mutations)PHTF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHTF1 (select a term)
intoGenPHTF1
Cancer3DPHTF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604950   
Orphanet
MedgenPHTF1
Genetic Testing Registry PHTF1
NextProtQ9UMS5 [Medical]
TSGene10745
GENETestsPHTF1
Target ValidationPHTF1
Huge Navigator PHTF1 [HugePedia]
snp3D : Map Gene to Disease10745
BioCentury BCIQPHTF1
ClinGenPHTF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10745
Chemical/Pharm GKB GenePA33278
Clinical trialPHTF1
Miscellaneous
canSAR (ICR)PHTF1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHTF1
EVEXPHTF1
GoPubMedPHTF1
iHOPPHTF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:30 CEST 2017

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