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PHTF2 (putative homeodomain transcription factor 2)

Identity

Alias_symbol (synonym)DKFZp434D166
Other alias-
HGNC (Hugo) PHTF2
LocusID (NCBI) 57157
Atlas_Id 71895
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 77840130 and ends at 77957504 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CTNNA3 (10q21.3) / PHTF2 (7q11.23)MTERF1 (7q21.2) / PHTF2 (7q11.23)PHTF2 (7q11.23) / AC007000.1 ()
PHTF2 (7q11.23) / BET1 (7q21.3)PHTF2 (7q11.23) / RAB1A (2p14)PHTF2 (7q11.23) / RUNDC3B (7q21.12)
RAB1A (2p14) / PHTF2 (7q11.23)PHTF2 BET1PHTF2 RAB1A
PHTF2 AC007000.1RAB1A PHTF2MTERF PHTF2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHTF2   13411
Cards
Entrez_Gene (NCBI)PHTF2  57157  putative homeodomain transcription factor 2
Aliases
GeneCards (Weizmann)PHTF2
Ensembl hg19 (Hinxton)ENSG00000006576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006576 [Gene_View]  chr7:77840130-77957504 [Contig_View]  PHTF2 [Vega]
ICGC DataPortalENSG00000006576
TCGA cBioPortalPHTF2
AceView (NCBI)PHTF2
Genatlas (Paris)PHTF2
WikiGenes57157
SOURCE (Princeton)PHTF2
Genetics Home Reference (NIH)PHTF2
Genomic and cartography
GoldenPath hg38 (UCSC)PHTF2  -     chr7:77840130-77957504 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHTF2  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblPHTF2 - 7q11.23 [CytoView hg19]  PHTF2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIPHTF2 [Mapview hg19]  PHTF2 [Mapview hg38]
OMIM616785   
Gene and transcription
Genbank (Entrez)AK090643 AK225854 AK308289 AL050389 AL136883
RefSeq transcript (Entrez)NM_001127357 NM_001127358 NM_001127359 NM_001127360 NM_020432
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHTF2
Cluster EST : UnigeneHs.601884 [ NCBI ]
CGAP (NCI)Hs.601884
Alternative Splicing GalleryENSG00000006576
Gene ExpressionPHTF2 [ NCBI-GEO ]   PHTF2 [ EBI - ARRAY_EXPRESS ]   PHTF2 [ SEEK ]   PHTF2 [ MEM ]
Gene Expression Viewer (FireBrowse)PHTF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57157
GTEX Portal (Tissue expression)PHTF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3S3
Splice isoforms : SwissVarQ8N3S3
PhosPhoSitePlusQ8N3S3
Domains : Interpro (EBI)TF_homeodomain_male   
Domain families : Pfam (Sanger)Phtf-FEM1B_bdg (PF12129)   
Domain families : Pfam (NCBI)pfam12129   
Conserved Domain (NCBI)PHTF2
DMDM Disease mutations57157
Blocks (Seattle)PHTF2
SuperfamilyQ8N3S3
Human Protein AtlasENSG00000006576
Peptide AtlasQ8N3S3
HPRD15130
IPIIPI00296540   IPI00884979   IPI00884901   IPI00160396   IPI00926697   IPI00927833   IPI00924628   IPI00895832   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3S3
IntAct (EBI)Q8N3S3
FunCoupENSG00000006576
BioGRIDPHTF2
STRING (EMBL)PHTF2
ZODIACPHTF2
Ontologies - Pathways
QuickGOQ8N3S3
Ontology : AmiGODNA binding  nucleus  endoplasmic reticulum  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  endoplasmic reticulum  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkPHTF2
Atlas of Cancer Signalling NetworkPHTF2
Wikipedia pathwaysPHTF2
Orthology - Evolution
OrthoDB57157
GeneTree (enSembl)ENSG00000006576
Phylogenetic Trees/Animal Genes : TreeFamPHTF2
HOVERGENQ8N3S3
HOGENOMQ8N3S3
Homologs : HomoloGenePHTF2
Homology/Alignments : Family Browser (UCSC)PHTF2
Gene fusions - Rearrangements
Fusion: TCGAPHTF2 BET1
Fusion: TCGAPHTF2 RAB1A
Fusion: TCGAPHTF2 AC007000.1
Fusion: TCGARAB1A PHTF2
Fusion: TCGAMTERF PHTF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHTF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHTF2
dbVarPHTF2
ClinVarPHTF2
1000_GenomesPHTF2 
Exome Variant ServerPHTF2
ExAC (Exome Aggregation Consortium)PHTF2 (select the gene name)
Genetic variants : HAPMAP57157
Genomic Variants (DGV)PHTF2 [DGVbeta]
DECIPHERPHTF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHTF2 
Mutations
ICGC Data PortalPHTF2 
TCGA Data PortalPHTF2 
Broad Tumor PortalPHTF2
OASIS PortalPHTF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHTF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHTF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHTF2
DgiDB (Drug Gene Interaction Database)PHTF2
DoCM (Curated mutations)PHTF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHTF2 (select a term)
intoGenPHTF2
Cancer3DPHTF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616785   
Orphanet
MedgenPHTF2
Genetic Testing Registry PHTF2
NextProtQ8N3S3 [Medical]
TSGene57157
GENETestsPHTF2
Target ValidationPHTF2
Huge Navigator PHTF2 [HugePedia]
snp3D : Map Gene to Disease57157
BioCentury BCIQPHTF2
ClinGenPHTF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57157
Chemical/Pharm GKB GenePA33279
Clinical trialPHTF2
Miscellaneous
canSAR (ICR)PHTF2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHTF2
EVEXPHTF2
GoPubMedPHTF2
iHOPPHTF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:30 CEST 2017

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