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PHYHIPL (phytanoyl-CoA 2-hydroxylase interacting protein like)

Identity

Alias_namesphytanoyl-CoA hydroxylase interacting protein-like
phytanoyl-CoA 2-hydroxylase interacting protein-like
Alias_symbol (synonym)KIAA1796
Em:AC025038.1
Other alias-
HGNC (Hugo) PHYHIPL
LocusID (NCBI) 84457
Atlas_Id 71899
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 59177467 and ends at 59247774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BMS1 (10q11.21) / PHYHIPL (10q21.1)GBAS (7p11.2) / PHYHIPL (10q21.1)MRC2 (17q23.2) / PHYHIPL (10q21.1)
PHYHIPL (10q21.1) / CCND1 (11q13.3)PHYHIPL (10q21.1) / PHYHIPL (10q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHYHIPL   29378
Cards
Entrez_Gene (NCBI)PHYHIPL  84457  phytanoyl-CoA 2-hydroxylase interacting protein like
Aliases
GeneCards (Weizmann)PHYHIPL
Ensembl hg19 (Hinxton)ENSG00000165443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165443 [Gene_View]  chr10:59177467-59247774 [Contig_View]  PHYHIPL [Vega]
ICGC DataPortalENSG00000165443
TCGA cBioPortalPHYHIPL
AceView (NCBI)PHYHIPL
Genatlas (Paris)PHYHIPL
WikiGenes84457
SOURCE (Princeton)PHYHIPL
Genetics Home Reference (NIH)PHYHIPL
Genomic and cartography
GoldenPath hg38 (UCSC)PHYHIPL  -     chr10:59177467-59247774 +  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHYHIPL  -     10q21.1   [Description]    (hg19-Feb_2009)
EnsemblPHYHIPL - 10q21.1 [CytoView hg19]  PHYHIPL - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIPHYHIPL [Mapview hg19]  PHYHIPL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058699 AK054956 AL365474 AL834339 AM392743
RefSeq transcript (Entrez)NM_001143774 NM_032439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHYHIPL
Cluster EST : UnigeneHs.499704 [ NCBI ]
CGAP (NCI)Hs.499704
Alternative Splicing GalleryENSG00000165443
Gene ExpressionPHYHIPL [ NCBI-GEO ]   PHYHIPL [ EBI - ARRAY_EXPRESS ]   PHYHIPL [ SEEK ]   PHYHIPL [ MEM ]
Gene Expression Viewer (FireBrowse)PHYHIPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84457
GTEX Portal (Tissue expression)PHYHIPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FC7
Splice isoforms : SwissVarQ96FC7
PhosPhoSitePlusQ96FC7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Conserved Domain (NCBI)PHYHIPL
DMDM Disease mutations84457
Blocks (Seattle)PHYHIPL
SuperfamilyQ96FC7
Human Protein AtlasENSG00000165443
Peptide AtlasQ96FC7
HPRD15131
IPIIPI00289396   IPI00646501   IPI00470884   
Protein Interaction databases
DIP (DOE-UCLA)Q96FC7
IntAct (EBI)Q96FC7
FunCoupENSG00000165443
BioGRIDPHYHIPL
STRING (EMBL)PHYHIPL
ZODIACPHYHIPL
Ontologies - Pathways
QuickGOQ96FC7
Ontology : AmiGOcytoplasm  mitochondrion  
Ontology : EGO-EBIcytoplasm  mitochondrion  
NDEx NetworkPHYHIPL
Atlas of Cancer Signalling NetworkPHYHIPL
Wikipedia pathwaysPHYHIPL
Orthology - Evolution
OrthoDB84457
GeneTree (enSembl)ENSG00000165443
Phylogenetic Trees/Animal Genes : TreeFamPHYHIPL
HOVERGENQ96FC7
HOGENOMQ96FC7
Homologs : HomoloGenePHYHIPL
Homology/Alignments : Family Browser (UCSC)PHYHIPL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHYHIPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHYHIPL
dbVarPHYHIPL
ClinVarPHYHIPL
1000_GenomesPHYHIPL 
Exome Variant ServerPHYHIPL
ExAC (Exome Aggregation Consortium)PHYHIPL (select the gene name)
Genetic variants : HAPMAP84457
Genomic Variants (DGV)PHYHIPL [DGVbeta]
DECIPHERPHYHIPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHYHIPL 
Mutations
ICGC Data PortalPHYHIPL 
TCGA Data PortalPHYHIPL 
Broad Tumor PortalPHYHIPL
OASIS PortalPHYHIPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHYHIPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPHYHIPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PHYHIPL
DgiDB (Drug Gene Interaction Database)PHYHIPL
DoCM (Curated mutations)PHYHIPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHYHIPL (select a term)
intoGenPHYHIPL
Cancer3DPHYHIPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPHYHIPL
Genetic Testing Registry PHYHIPL
NextProtQ96FC7 [Medical]
TSGene84457
GENETestsPHYHIPL
Target ValidationPHYHIPL
Huge Navigator PHYHIPL [HugePedia]
snp3D : Map Gene to Disease84457
BioCentury BCIQPHYHIPL
ClinGenPHYHIPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84457
Chemical/Pharm GKB GenePA134906827
Clinical trialPHYHIPL
Miscellaneous
canSAR (ICR)PHYHIPL (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHYHIPL
EVEXPHYHIPL
GoPubMedPHYHIPL
iHOPPHYHIPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:18 CEST 2017

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