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PI4K2B (phosphatidylinositol 4-kinase type 2 beta)

Identity

Alias_symbol (synonym)PI4KIIB
FLJ11105
PIK42B
Other alias
HGNC (Hugo) PI4K2B
LocusID (NCBI) 55300
Atlas_Id 47450
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 25235653 and ends at 25280831 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PI4K2B (4p15.2) / PI4K2B (4p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PI4K2B   18215
Cards
Entrez_Gene (NCBI)PI4K2B  55300  phosphatidylinositol 4-kinase type 2 beta
AliasesPI4KIIB; PIK42B
GeneCards (Weizmann)PI4K2B
Ensembl hg19 (Hinxton)ENSG00000038210 [Gene_View]  chr4:25235653-25280831 [Contig_View]  PI4K2B [Vega]
Ensembl hg38 (Hinxton)ENSG00000038210 [Gene_View]  chr4:25235653-25280831 [Contig_View]  PI4K2B [Vega]
ICGC DataPortalENSG00000038210
TCGA cBioPortalPI4K2B
AceView (NCBI)PI4K2B
Genatlas (Paris)PI4K2B
WikiGenes55300
SOURCE (Princeton)PI4K2B
Genetics Home Reference (NIH)PI4K2B
Genomic and cartography
GoldenPath hg19 (UCSC)PI4K2B  -     chr4:25235653-25280831 +  4p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PI4K2B  -     4p15.2   [Description]    (hg38-Dec_2013)
EnsemblPI4K2B - 4p15.2 [CytoView hg19]  PI4K2B - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBIPI4K2B [Mapview hg19]  PI4K2B [Mapview hg38]
OMIM612101   
Gene and transcription
Genbank (Entrez)AF411320 AK001967 AK023186 AK128622 AK296302
RefSeq transcript (Entrez)NM_018323
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)PI4K2B
Cluster EST : UnigeneHs.191701 [ NCBI ]
CGAP (NCI)Hs.191701
Alternative Splicing GalleryENSG00000038210
Gene ExpressionPI4K2B [ NCBI-GEO ]   PI4K2B [ EBI - ARRAY_EXPRESS ]   PI4K2B [ SEEK ]   PI4K2B [ MEM ]
Gene Expression Viewer (FireBrowse)PI4K2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55300
GTEX Portal (Tissue expression)PI4K2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCG2
Splice isoforms : SwissVarQ8TCG2
Catalytic activity : Enzyme2.7.1.67 [ Enzyme-Expasy ]   2.7.1.672.7.1.67 [ IntEnz-EBI ]   2.7.1.67 [ BRENDA ]   2.7.1.67 [ KEGG ]   
PhosPhoSitePlusQ8TCG2
Domains : Interpro (EBI)PI3/4_kinase_cat_dom   
Domain families : Pfam (Sanger)PI3_PI4_kinase (PF00454)   
Domain families : Pfam (NCBI)pfam00454   
Conserved Domain (NCBI)PI4K2B
DMDM Disease mutations55300
Blocks (Seattle)PI4K2B
PDB (SRS)4WTV   
PDB (PDBSum)4WTV   
PDB (IMB)4WTV   
PDB (RSDB)4WTV   
Structural Biology KnowledgeBase4WTV   
SCOP (Structural Classification of Proteins)4WTV   
CATH (Classification of proteins structures)4WTV   
SuperfamilyQ8TCG2
Human Protein AtlasENSG00000038210
Peptide AtlasQ8TCG2
HPRD15132
IPIIPI00291068   IPI00965157   IPI01014042   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCG2
IntAct (EBI)Q8TCG2
FunCoupENSG00000038210
BioGRIDPI4K2B
STRING (EMBL)PI4K2B
ZODIACPI4K2B
Ontologies - Pathways
QuickGOQ8TCG2
Ontology : AmiGO1-phosphatidylinositol 4-kinase activity  ATP binding  cytoplasm  cytosol  phosphatidylinositol biosynthetic process  membrane  phosphatidylinositol phosphorylation  phosphatidylinositol phosphorylation  
Ontology : EGO-EBI1-phosphatidylinositol 4-kinase activity  ATP binding  cytoplasm  cytosol  phosphatidylinositol biosynthetic process  membrane  phosphatidylinositol phosphorylation  phosphatidylinositol phosphorylation  
Pathways : KEGGInositol phosphate metabolism    Phosphatidylinositol signaling system   
NDEx NetworkPI4K2B
Atlas of Cancer Signalling NetworkPI4K2B
Wikipedia pathwaysPI4K2B
Orthology - Evolution
OrthoDB55300
GeneTree (enSembl)ENSG00000038210
Phylogenetic Trees/Animal Genes : TreeFamPI4K2B
HOVERGENQ8TCG2
HOGENOMQ8TCG2
Homologs : HomoloGenePI4K2B
Homology/Alignments : Family Browser (UCSC)PI4K2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPI4K2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PI4K2B
dbVarPI4K2B
ClinVarPI4K2B
1000_GenomesPI4K2B 
Exome Variant ServerPI4K2B
ExAC (Exome Aggregation Consortium)PI4K2B (select the gene name)
Genetic variants : HAPMAP55300
Genomic Variants (DGV)PI4K2B [DGVbeta]
DECIPHER (Syndromes)4:25235653-25280831  ENSG00000038210
CONAN: Copy Number AnalysisPI4K2B 
Mutations
ICGC Data PortalPI4K2B 
TCGA Data PortalPI4K2B 
Broad Tumor PortalPI4K2B
OASIS PortalPI4K2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPI4K2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPI4K2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PI4K2B
DgiDB (Drug Gene Interaction Database)PI4K2B
DoCM (Curated mutations)PI4K2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PI4K2B (select a term)
intoGenPI4K2B
Cancer3DPI4K2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612101   
Orphanet
MedgenPI4K2B
Genetic Testing Registry PI4K2B
NextProtQ8TCG2 [Medical]
TSGene55300
GENETestsPI4K2B
Huge Navigator PI4K2B [HugePedia]
snp3D : Map Gene to Disease55300
BioCentury BCIQPI4K2B
ClinGenPI4K2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55300
Chemical/Pharm GKB GenePA142671173
Clinical trialPI4K2B
Miscellaneous
canSAR (ICR)PI4K2B (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePI4K2B
EVEXPI4K2B
GoPubMedPI4K2B
iHOPPI4K2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:17 CEST 2017

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