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PI4KAP1 (phosphatidylinositol 4-kinase alpha pseudogene 1)

Identity

Alias_namesphosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1
Other alias-
HGNC (Hugo) PI4KAP1
LocusID (NCBI) 728233
Atlas_Id 71902
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18533864 and ends at 18548828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PI4KAP1   33576
Cards
Entrez_Gene (NCBI)PI4KAP1  728233  phosphatidylinositol 4-kinase alpha pseudogene 1
Aliases
GeneCards (Weizmann)PI4KAP1
Ensembl hg19 (Hinxton)ENSG00000274602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274602 [Gene_View]  chr22:18533864-18548828 [Contig_View]  PI4KAP1 [Vega]
ICGC DataPortalENSG00000274602
TCGA cBioPortalPI4KAP1
AceView (NCBI)PI4KAP1
Genatlas (Paris)PI4KAP1
WikiGenes728233
SOURCE (Princeton)PI4KAP1
Genetics Home Reference (NIH)PI4KAP1
Genomic and cartography
GoldenPath hg38 (UCSC)PI4KAP1  -     chr22:18533864-18548828 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PI4KAP1  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblPI4KAP1 - 22q11.21 [CytoView hg19]  PI4KAP1 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIPI4KAP1 [Mapview hg19]  PI4KAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002141 AK024034 AK096724 AK292695 BC072398
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PI4KAP1
Cluster EST : UnigeneHs.592456 [ NCBI ]
CGAP (NCI)Hs.592456
Alternative Splicing GalleryENSG00000274602
Gene ExpressionPI4KAP1 [ NCBI-GEO ]   PI4KAP1 [ EBI - ARRAY_EXPRESS ]   PI4KAP1 [ SEEK ]   PI4KAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PI4KAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728233
GTEX Portal (Tissue expression)PI4KAP1
Human Protein AtlasENSG00000274602-PI4KAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8J0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8J0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8J0
Splice isoforms : SwissVarQ8N8J0
PhosPhoSitePlusQ8N8J0
Domains : Interpro (EBI)PI_Kinase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PI4KAP1
DMDM Disease mutations728233
Blocks (Seattle)PI4KAP1
SuperfamilyQ8N8J0
Human Protein Atlas [tissue]ENSG00000274602-PI4KAP1 [tissue]
Peptide AtlasQ8N8J0
IPIIPI00102940   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8J0
IntAct (EBI)Q8N8J0
FunCoupENSG00000274602
BioGRIDPI4KAP1
STRING (EMBL)PI4KAP1
ZODIACPI4KAP1
Ontologies - Pathways
QuickGOQ8N8J0
Ontology : AmiGO1-phosphatidylinositol 4-kinase activity  intracellular  plasma membrane  phosphatidylinositol phosphorylation  phosphatidylinositol-mediated signaling  
Ontology : EGO-EBI1-phosphatidylinositol 4-kinase activity  intracellular  plasma membrane  phosphatidylinositol phosphorylation  phosphatidylinositol-mediated signaling  
NDEx NetworkPI4KAP1
Atlas of Cancer Signalling NetworkPI4KAP1
Wikipedia pathwaysPI4KAP1
Orthology - Evolution
OrthoDB728233
GeneTree (enSembl)ENSG00000274602
Phylogenetic Trees/Animal Genes : TreeFamPI4KAP1
HOVERGENQ8N8J0
HOGENOMQ8N8J0
Homologs : HomoloGenePI4KAP1
Homology/Alignments : Family Browser (UCSC)PI4KAP1
Gene fusions - Rearrangements
Tumor Fusion PortalPI4KAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPI4KAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PI4KAP1
dbVarPI4KAP1
ClinVarPI4KAP1
1000_GenomesPI4KAP1 
Exome Variant ServerPI4KAP1
ExAC (Exome Aggregation Consortium)ENSG00000274602
GNOMAD BrowserENSG00000274602
Genetic variants : HAPMAP728233
Genomic Variants (DGV)PI4KAP1 [DGVbeta]
DECIPHERPI4KAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPI4KAP1 
Mutations
ICGC Data PortalPI4KAP1 
TCGA Data PortalPI4KAP1 
Broad Tumor PortalPI4KAP1
OASIS PortalPI4KAP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPI4KAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PI4KAP1
DgiDB (Drug Gene Interaction Database)PI4KAP1
DoCM (Curated mutations)PI4KAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PI4KAP1 (select a term)
intoGenPI4KAP1
Cancer3DPI4KAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPI4KAP1
MedgenPI4KAP1
Genetic Testing Registry PI4KAP1
NextProtQ8N8J0 [Medical]
TSGene728233
GENETestsPI4KAP1
Target ValidationPI4KAP1
Huge Navigator PI4KAP1 [HugePedia]
snp3D : Map Gene to Disease728233
BioCentury BCIQPI4KAP1
ClinGenPI4KAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728233
Clinical trialPI4KAP1
Miscellaneous
canSAR (ICR)PI4KAP1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePI4KAP1
EVEXPI4KAP1
GoPubMedPI4KAP1
iHOPPI4KAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:44:09 CET 2017

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