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PI4KAP2 (phosphatidylinositol 4-kinase alpha pseudogene 2)

Identity

Alias_namesphosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2
Other alias-
HGNC (Hugo) PI4KAP2
LocusID (NCBI) 375133
Atlas_Id 71903
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 21472998 and ends at 21517491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSMG2 (18p11.21) / PI4KAP2 (22q11.21)TMEM91 (19q13.2) / PI4KAP2 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PI4KAP2   33577
Cards
Entrez_Gene (NCBI)PI4KAP2  375133  phosphatidylinositol 4-kinase alpha pseudogene 2
Aliases
GeneCards (Weizmann)PI4KAP2
Ensembl hg19 (Hinxton)ENSG00000183506 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183506 [Gene_View]  chr22:21472998-21517491 [Contig_View]  PI4KAP2 [Vega]
ICGC DataPortalENSG00000183506
TCGA cBioPortalPI4KAP2
AceView (NCBI)PI4KAP2
Genatlas (Paris)PI4KAP2
WikiGenes375133
SOURCE (Princeton)PI4KAP2
Genetics Home Reference (NIH)PI4KAP2
Genomic and cartography
GoldenPath hg38 (UCSC)PI4KAP2  -     chr22:21472998-21517491 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PI4KAP2  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblPI4KAP2 - 22q11.21 [CytoView hg19]  PI4KAP2 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIPI4KAP2 [Mapview hg19]  PI4KAP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA300351 AA425488 AK126860 AK297163 AK298744
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PI4KAP2
Cluster EST : UnigeneHs.743559 [ NCBI ]
CGAP (NCI)Hs.743559
Alternative Splicing GalleryENSG00000183506
Gene ExpressionPI4KAP2 [ NCBI-GEO ]   PI4KAP2 [ EBI - ARRAY_EXPRESS ]   PI4KAP2 [ SEEK ]   PI4KAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PI4KAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375133
GTEX Portal (Tissue expression)PI4KAP2
Human Protein AtlasENSG00000183506-PI4KAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4QPH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4QPH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4QPH2
Splice isoforms : SwissVarA4QPH2
PhosPhoSitePlusA4QPH2
Domaine pattern : Prosite (Expaxy)PI3_4_KINASE_2 (PS00916)    PI3_4_KINASE_3 (PS50290)   
Domains : Interpro (EBI)Kinase-like_dom    PI3/4_kinase_cat_dom    PI3/4_kinase_CS    PI_Kinase   
Domain families : Pfam (Sanger)PI3_PI4_kinase (PF00454)   
Domain families : Pfam (NCBI)pfam00454   
Domain families : Smart (EMBL)PI3Kc (SM00146)  
Conserved Domain (NCBI)PI4KAP2
DMDM Disease mutations375133
Blocks (Seattle)PI4KAP2
SuperfamilyA4QPH2
Human Protein Atlas [tissue]ENSG00000183506-PI4KAP2 [tissue]
Peptide AtlasA4QPH2
HPRD14194
IPIIPI00456476   IPI00885008   IPI00871913   
Protein Interaction databases
DIP (DOE-UCLA)A4QPH2
IntAct (EBI)A4QPH2
FunCoupENSG00000183506
BioGRIDPI4KAP2
STRING (EMBL)PI4KAP2
ZODIACPI4KAP2
Ontologies - Pathways
QuickGOA4QPH2
Ontology : AmiGO1-phosphatidylinositol 4-kinase activity  intracellular  plasma membrane  phosphatidylinositol phosphorylation  phosphatidylinositol-mediated signaling  
Ontology : EGO-EBI1-phosphatidylinositol 4-kinase activity  intracellular  plasma membrane  phosphatidylinositol phosphorylation  phosphatidylinositol-mediated signaling  
NDEx NetworkPI4KAP2
Atlas of Cancer Signalling NetworkPI4KAP2
Wikipedia pathwaysPI4KAP2
Orthology - Evolution
OrthoDB375133
GeneTree (enSembl)ENSG00000183506
Phylogenetic Trees/Animal Genes : TreeFamPI4KAP2
HOVERGENA4QPH2
HOGENOMA4QPH2
Homologs : HomoloGenePI4KAP2
Homology/Alignments : Family Browser (UCSC)PI4KAP2
Gene fusions - Rearrangements
Tumor Fusion PortalPI4KAP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPI4KAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PI4KAP2
dbVarPI4KAP2
ClinVarPI4KAP2
1000_GenomesPI4KAP2 
Exome Variant ServerPI4KAP2
ExAC (Exome Aggregation Consortium)ENSG00000183506
GNOMAD BrowserENSG00000183506
Genetic variants : HAPMAP375133
Genomic Variants (DGV)PI4KAP2 [DGVbeta]
DECIPHERPI4KAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPI4KAP2 
Mutations
ICGC Data PortalPI4KAP2 
TCGA Data PortalPI4KAP2 
Broad Tumor PortalPI4KAP2
OASIS PortalPI4KAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPI4KAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPI4KAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PI4KAP2
DgiDB (Drug Gene Interaction Database)PI4KAP2
DoCM (Curated mutations)PI4KAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PI4KAP2 (select a term)
intoGenPI4KAP2
Cancer3DPI4KAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPI4KAP2
MedgenPI4KAP2
Genetic Testing Registry PI4KAP2
NextProtA4QPH2 [Medical]
TSGene375133
GENETestsPI4KAP2
Target ValidationPI4KAP2
Huge Navigator PI4KAP2 [HugePedia]
snp3D : Map Gene to Disease375133
BioCentury BCIQPI4KAP2
ClinGenPI4KAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375133
Clinical trialPI4KAP2
Miscellaneous
canSAR (ICR)PI4KAP2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePI4KAP2
EVEXPI4KAP2
GoPubMedPI4KAP2
iHOPPI4KAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:44:09 CET 2017

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