Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PIBF1 (progesterone immunomodulatory binding factor 1)

Identity

Alias_namesC13orf24
chromosome 13 open reading frame 24
Alias_symbol (synonym)CEP90
Other aliasPIBF
HGNC (Hugo) PIBF1
LocusID (NCBI) 10464
Atlas_Id 43918
Location 13q21.33  [Link to chromosome band 13q21]
Location_base_pair Starts at 72782023 and ends at 73016453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCCA (13q32.3) / PIBF1 (13q22.1)PIBF1 (13q22.1) / C11orf65 (11q22.3)PIBF1 (13q22.1) / ITGB1BP1 (2p25.1)
POR (7q11.23) / PIBF1 (13q22.1)WHSC1 (4p16.3) / PIBF1 (13q22.1)PIBF1 13q22.1 / C11orf65 11q22.3
POR 7q11.23 / PIBF1 13q22.1WHSC1 4p16.3 / PIBF1 13q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIBF1   23352
Cards
Entrez_Gene (NCBI)PIBF1  10464  progesterone immunomodulatory binding factor 1
AliasesC13orf24; CEP90; PIBF
GeneCards (Weizmann)PIBF1
Ensembl hg19 (Hinxton)ENSG00000083535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083535 [Gene_View]  chr13:72782023-73016453 [Contig_View]  PIBF1 [Vega]
ICGC DataPortalENSG00000083535
TCGA cBioPortalPIBF1
AceView (NCBI)PIBF1
Genatlas (Paris)PIBF1
WikiGenes10464
SOURCE (Princeton)PIBF1
Genetics Home Reference (NIH)PIBF1
Genomic and cartography
GoldenPath hg38 (UCSC)PIBF1  -     chr13:72782023-73016453 +  13q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIBF1  -     13q21.33   [Description]    (hg19-Feb_2009)
EnsemblPIBF1 - 13q21.33 [CytoView hg19]  PIBF1 - 13q21.33 [CytoView hg38]
Mapping of homologs : NCBIPIBF1 [Mapview hg19]  PIBF1 [Mapview hg38]
OMIM607532   
Gene and transcription
Genbank (Entrez)AF330046 AK309828 AY370776 AY375528 BC006009
RefSeq transcript (Entrez)NM_001349655 NM_006346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIBF1
Cluster EST : UnigeneHs.441926 [ NCBI ]
CGAP (NCI)Hs.441926
Alternative Splicing GalleryENSG00000083535
Gene ExpressionPIBF1 [ NCBI-GEO ]   PIBF1 [ EBI - ARRAY_EXPRESS ]   PIBF1 [ SEEK ]   PIBF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIBF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10464
GTEX Portal (Tissue expression)PIBF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXW3
Splice isoforms : SwissVarQ8WXW3
PhosPhoSitePlusQ8WXW3
Domains : Interpro (EBI)PIBF1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PIBF1
DMDM Disease mutations10464
Blocks (Seattle)PIBF1
SuperfamilyQ8WXW3
Human Protein AtlasENSG00000083535
Peptide AtlasQ8WXW3
HPRD06337
IPIIPI00328765   IPI00643693   IPI00643109   IPI00871729   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXW3
IntAct (EBI)Q8WXW3
FunCoupENSG00000083535
BioGRIDPIBF1
STRING (EMBL)PIBF1
ZODIACPIBF1
Ontologies - Pathways
QuickGOQ8WXW3
Ontology : AmiGOimmune system process  interleukin-4 receptor binding  protein binding  extracellular space  nucleus  nucleoplasm  centrosome  microtubule organizing center  cytosol  mitotic metaphase plate congression  negative regulation of prostaglandin biosynthetic process  negative regulation of interleukin-12 production  positive regulation of interleukin-10 production  negative regulation of natural killer cell activation  centriolar satellite  protein localization to centrosome  mitotic spindle assembly  non-motile cilium assembly  
Ontology : EGO-EBIimmune system process  interleukin-4 receptor binding  protein binding  extracellular space  nucleus  nucleoplasm  centrosome  microtubule organizing center  cytosol  mitotic metaphase plate congression  negative regulation of prostaglandin biosynthetic process  negative regulation of interleukin-12 production  positive regulation of interleukin-10 production  negative regulation of natural killer cell activation  centriolar satellite  protein localization to centrosome  mitotic spindle assembly  non-motile cilium assembly  
NDEx NetworkPIBF1
Atlas of Cancer Signalling NetworkPIBF1
Wikipedia pathwaysPIBF1
Orthology - Evolution
OrthoDB10464
GeneTree (enSembl)ENSG00000083535
Phylogenetic Trees/Animal Genes : TreeFamPIBF1
HOVERGENQ8WXW3
HOGENOMQ8WXW3
Homologs : HomoloGenePIBF1
Homology/Alignments : Family Browser (UCSC)PIBF1
Gene fusions - Rearrangements
Fusion : MitelmanPIBF1/C11orf65 [13q22.1/11q22.3]  
Fusion : MitelmanPOR/PIBF1 [7q11.23/13q22.1]  [t(7;13)(q11;q22)]  
Fusion : MitelmanWHSC1/PIBF1 [4p16.3/13q22.1]  [t(4;13)(p16;q22)]  
Fusion: TCGAPIBF1 13q22.1 C11orf65 11q22.3 LUSC
Fusion: TCGAPOR 7q11.23 PIBF1 13q22.1 THCA
Fusion: TCGAWHSC1 4p16.3 PIBF1 13q22.1 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIBF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIBF1
dbVarPIBF1
ClinVarPIBF1
1000_GenomesPIBF1 
Exome Variant ServerPIBF1
ExAC (Exome Aggregation Consortium)PIBF1 (select the gene name)
Genetic variants : HAPMAP10464
Genomic Variants (DGV)PIBF1 [DGVbeta]
DECIPHERPIBF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIBF1 
Mutations
ICGC Data PortalPIBF1 
TCGA Data PortalPIBF1 
Broad Tumor PortalPIBF1
OASIS PortalPIBF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIBF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIBF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIBF1
DgiDB (Drug Gene Interaction Database)PIBF1
DoCM (Curated mutations)PIBF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIBF1 (select a term)
intoGenPIBF1
Cancer3DPIBF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607532   
Orphanet
MedgenPIBF1
Genetic Testing Registry PIBF1
NextProtQ8WXW3 [Medical]
TSGene10464
GENETestsPIBF1
Target ValidationPIBF1
Huge Navigator PIBF1 [HugePedia]
snp3D : Map Gene to Disease10464
BioCentury BCIQPIBF1
ClinGenPIBF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10464
Chemical/Pharm GKB GenePA162399421
Clinical trialPIBF1
Miscellaneous
canSAR (ICR)PIBF1 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIBF1
EVEXPIBF1
GoPubMedPIBF1
iHOPPIBF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:24:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.