Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PICK1 (protein interacting with PRKCA 1)

Identity

Other namesPICK
PRKCABP
HGNC (Hugo) PICK1
LocusID (NCBI) 9463
Location 22q13.1
Location_base_pair Starts at 38453262 and ends at 38471708 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)PICK1   9394
Entrez_Gene (NCBI)PICK1  9463  protein interacting with PRKCA 1
Cards
GeneCards (Weizmann)PICK1
Ensembl (Hinxton)ENSG00000100151 [Gene_View]  chr22:38453262-38471708 [Contig_View]  PICK1 [Vega]
AceView (NCBI)PICK1
Genatlas (Paris)PICK1
SOURCE (Stanford)NM_001039583 NM_001039584 NM_012407
Genomic and cartography
GoldenPath (UCSC)PICK1  -  22q13.1   chr22:38453262-38471708 +  22q13.1   [Description]    (hg19-Feb_2009)
EnsemblPICK1 - 22q13.1 [CytoView]
Mapping of homologs : NCBIPICK1 [Mapview]
OMIM605926   
Gene and transcription
Genbank (Entrez)AB026491 AF231710 AK000875 AK092818 AK222640
RefSeq transcript (SRS)NM_001039583 NM_001039584 NM_012407
RefSeq transcript (Entrez)NM_001039583 NM_001039584 NM_012407
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)PICK1
Cluster EST : UnigeneHs.180871 [ SRS ] Hs.180871 [ NCBI ]
CGAP (NCI)Hs.180871
Alternative Splicing : Fast-db (Paris)GSHG0020012
Alternative Splicing GalleryENSG00000100151
Gene ExpressionPICK1 [ NCBI-GEO ]   PICK1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRD5 (SRS) Q9NRD5 (Uniprot)
NextProtQ9NRD5
With graphics : InterProQ9NRD5
Splice isoforms : SwissVarQ9NRD5(Swissvar)
Domaine pattern : Prosite (SRS)AH (PS50870)    PDZ (PS50106)   
Domaine pattern : Prosite (Expaxy)AH (PS50870)    PDZ (PS50106)   
Domains : Interpro (SRS)Arfaptin_homology_dom    PDZ   
Domains : Interpro (EBI)Arfaptin_homology_dom    PDZ   
Related proteins : CluSTrQ9NRD5
Domain families : Pfam (SRS)Arfaptin (PF06456)    PDZ (PF00595)   
Domain families : Pfam (Sanger)Arfaptin (PF06456)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam06456    pfam00595   
Domain families : Smart (EMBL)Arfaptin (SM01015)  PDZ (SM00228)  
DMDM9463
Blocks (Seattle)Q9NRD5
PDB (SRS)2GZV   
PDB (PDBSum)2GZV   
PDB (IMB)2GZV   
PDB (RSDB)2GZV   
Human Protein AtlasENSG00000100151
HPRD16176
IPIIPI00160369   IPI00893491   IPI00983551   IPI00893094   IPI00893321   IPI00892705   IPI00889725   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRD5
IntAct (EBI)Q9NRD5
FunCoupENSG00000100151
REACTOMEPICK1
Protein Interaction Database9463
BioGRIDPICK1
InParanoidQ9NRD5
Interologous Interaction database Q9NRD5
IntegromeDBPICK1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PICK1
SNP (GeneSNP Utah)PICK1
SNP : HGBasePICK1
Genetic variants : HAPMAPPICK1
Somatic Mutations in Cancer : COSMICPICK1 
CONAN: Copy Number AnalysisPICK1 
Mutations and Diseases : HGMDPICK1
OMIM605926   
GENETests605926   
Disease Genetic AssociationPICK1
Huge Navigator PICK1 [HugePedia]  PICK1 [HugeCancerGEM]
Genomic VariantsPICK1  PICK1 [DGVbeta]
snp3D : Map Gene to Disease9463
General knowledge
Homologs : HomoloGenePICK1
Homology/Alignments : Family Browser (UCSC)PICK1
Phylogenetic Trees/Animal Genes : TreeFamPICK1
Chemical/Protein Interactions : CTD9463
Chemical/Pharm GKB GenePA33760
Clinical trialPICK1
Cancer Resource (Charite)ENSG00000100151
Ontology : AmiGOprotein kinase C binding  receptor binding  protein binding  cytoplasm  mitochondrion  Golgi apparatus  plasma membrane  plasma membrane  ATP catabolic process  protein phosphorylation  protein targeting  retrograde vesicle-mediated transport, Golgi to ER  protein kinase C-activating G-protein coupled receptor signaling pathway  synaptic transmission  protein C-terminus binding  postsynaptic density  monoamine transport  ATPase activity  enzyme binding  protein domain specific binding  cell junction  endocytic vesicle membrane  presynaptic membrane  identical protein binding  DNA methylation involved in embryo development  DNA methylation involved in gamete generation  receptor clustering  protein complex  neuronal ion channel clustering  synapse  metal ion binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein kinase C binding  receptor binding  protein binding  cytoplasm  mitochondrion  Golgi apparatus  plasma membrane  plasma membrane  ATP catabolic process  protein phosphorylation  protein targeting  retrograde vesicle-mediated transport, Golgi to ER  protein kinase C-activating G-protein coupled receptor signaling pathway  synaptic transmission  protein C-terminus binding  postsynaptic density  monoamine transport  ATPase activity  enzyme binding  protein domain specific binding  cell junction  endocytic vesicle membrane  presynaptic membrane  identical protein binding  DNA methylation involved in embryo development  DNA methylation involved in gamete generation  receptor clustering  protein complex  neuronal ion channel clustering  synapse  metal ion binding  perinuclear region of cytoplasm  
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
PubGenePICK1
iHOPPICK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:34:15 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.