Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PICSAR (P38 inhibited cutaneous squamous cell carcinoma associated lincRNA)

Identity

Alias_namesC21orf113
NCRNA00162
LINC00162
chromosome 21 open reading frame 113
non-protein coding RNA 162
long intergenic non-protein coding RNA 162
Alias_symbol (synonym)PRED74
NLC1-C
Other aliasNLC1C
HGNC (Hugo) PICSAR
LocusID (NCBI) 378825
Atlas_Id 55720
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44999208 and ends at 45004727 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PICSAR   19725
Cards
Entrez_Gene (NCBI)PICSAR  378825  P38 inhibited cutaneous squamous cell carcinoma associated lincRNA
AliasesC21orf113; LINC00162; NCRNA00162; NLC1-C; 
NLC1C; PRED74
GeneCards (Weizmann)PICSAR
Ensembl hg19 (Hinxton)ENSG00000275874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275874 [Gene_View]  chr21:44999208-45004727 [Contig_View]  PICSAR [Vega]
ICGC DataPortalENSG00000275874
TCGA cBioPortalPICSAR
AceView (NCBI)PICSAR
Genatlas (Paris)PICSAR
WikiGenes378825
SOURCE (Princeton)PICSAR
Genetics Home Reference (NIH)PICSAR
Genomic and cartography
GoldenPath hg38 (UCSC)PICSAR  -     chr21:44999208-45004727 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PICSAR  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblPICSAR - 21q22.3 [CytoView hg19]  PICSAR - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIPICSAR [Mapview hg19]  PICSAR [Mapview hg38]
OMIM617191   
Gene and transcription
Genbank (Entrez)BC027456 CA441515
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PICSAR
Cluster EST : UnigeneHs.534828 [ NCBI ]
CGAP (NCI)Hs.534828
Alternative Splicing GalleryENSG00000275874
Gene ExpressionPICSAR [ NCBI-GEO ]   PICSAR [ EBI - ARRAY_EXPRESS ]   PICSAR [ SEEK ]   PICSAR [ MEM ]
Gene Expression Viewer (FireBrowse)PICSAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)378825
GTEX Portal (Tissue expression)PICSAR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PICSAR
DMDM Disease mutations378825
Blocks (Seattle)PICSAR
Human Protein AtlasENSG00000275874
IPIIPI00902475   IPI00985385   
Protein Interaction databases
FunCoupENSG00000275874
BioGRIDPICSAR
STRING (EMBL)PICSAR
ZODIACPICSAR
Ontologies - Pathways
Huge Navigator PICSAR [HugePedia]
snp3D : Map Gene to Disease378825
BioCentury BCIQPICSAR
ClinGenPICSAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378825
Chemical/Pharm GKB GenePA164723729
Clinical trialPICSAR
Miscellaneous
canSAR (ICR)PICSAR (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePICSAR
EVEXPICSAR
GoPubMedPICSAR
iHOPPICSAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:24 CEST 2017

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