Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PICSAR (P38 inhibited cutaneous squamous cell carcinoma associated lincRNA)

Identity

Alias_namesC21orf113
NCRNA00162
LINC00162
chromosome 21 open reading frame 113
non-protein coding RNA 162
long intergenic non-protein coding RNA 162
Alias_symbol (synonym)PRED74
NLC1-C
Other aliasNLC1C
HGNC (Hugo) PICSAR
LocusID (NCBI) 378825
Atlas_Id 55720
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46419122 and ends at 46424642 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PICSAR   19725
Cards
Entrez_Gene (NCBI)PICSAR  378825  P38 inhibited cutaneous squamous cell carcinoma associated lincRNA
AliasesC21orf113; LINC00162; NCRNA00162; NLC1-C; 
NLC1C; PRED74
GeneCards (Weizmann)PICSAR
Ensembl hg19 (Hinxton)ENSG00000275874 [Gene_View]  chr21:46419122-46424642 [Contig_View]  PICSAR [Vega]
Ensembl hg38 (Hinxton)ENSG00000275874 [Gene_View]  chr21:46419122-46424642 [Contig_View]  PICSAR [Vega]
ICGC DataPortalENSG00000275874
TCGA cBioPortalPICSAR
AceView (NCBI)PICSAR
Genatlas (Paris)PICSAR
WikiGenes378825
SOURCE (Princeton)PICSAR
Genetics Home Reference (NIH)PICSAR
Genomic and cartography
GoldenPath hg19 (UCSC)PICSAR  -     chr21:46419122-46424642 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PICSAR  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblPICSAR - 21q22.3 [CytoView hg19]  PICSAR - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIPICSAR [Mapview hg19]  PICSAR [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC027456 CA441515 HG511912
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)PICSAR
Cluster EST : UnigeneHs.534828 [ NCBI ]
CGAP (NCI)Hs.534828
Alternative Splicing GalleryENSG00000275874
Gene ExpressionPICSAR [ NCBI-GEO ]   PICSAR [ EBI - ARRAY_EXPRESS ]   PICSAR [ SEEK ]   PICSAR [ MEM ]
Gene Expression Viewer (FireBrowse)PICSAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378825
GTEX Portal (Tissue expression)PICSAR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C852   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C852  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C852
Splice isoforms : SwissVarP0C852
PhosPhoSitePlusP0C852
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PICSAR
DMDM Disease mutations378825
Blocks (Seattle)PICSAR
SuperfamilyP0C852
Human Protein AtlasENSG00000275874
Peptide AtlasP0C852
IPIIPI00902475   IPI00985385   
Protein Interaction databases
DIP (DOE-UCLA)P0C852
IntAct (EBI)P0C852
FunCoupENSG00000275874
BioGRIDPICSAR
STRING (EMBL)PICSAR
ZODIACPICSAR
Ontologies - Pathways
QuickGOP0C852
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPICSAR
Atlas of Cancer Signalling NetworkPICSAR
Wikipedia pathwaysPICSAR
Orthology - Evolution
OrthoDB378825
GeneTree (enSembl)ENSG00000275874
Phylogenetic Trees/Animal Genes : TreeFamPICSAR
HOVERGENP0C852
HOGENOMP0C852
Homologs : HomoloGenePICSAR
Homology/Alignments : Family Browser (UCSC)PICSAR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPICSAR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PICSAR
dbVarPICSAR
ClinVarPICSAR
1000_GenomesPICSAR 
Exome Variant ServerPICSAR
ExAC (Exome Aggregation Consortium)PICSAR (select the gene name)
Genetic variants : HAPMAP378825
Genomic Variants (DGV)PICSAR [DGVbeta]
DECIPHER (Syndromes)21:46419122-46424642  ENSG00000275874
CONAN: Copy Number AnalysisPICSAR 
Mutations
ICGC Data PortalPICSAR 
TCGA Data PortalPICSAR 
Broad Tumor PortalPICSAR
OASIS PortalPICSAR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPICSAR
BioMutasearch PICSAR
DgiDB (Drug Gene Interaction Database)PICSAR
DoCM (Curated mutations)PICSAR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PICSAR (select a term)
intoGenPICSAR
Cancer3DPICSAR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPICSAR
Genetic Testing Registry PICSAR
NextProtP0C852 [Medical]
TSGene378825
GENETestsPICSAR
Huge Navigator PICSAR [HugePedia]
snp3D : Map Gene to Disease378825
BioCentury BCIQPICSAR
ClinGenPICSAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378825
Chemical/Pharm GKB GenePA164723729
Clinical trialPICSAR
Miscellaneous
canSAR (ICR)PICSAR (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePICSAR
EVEXPICSAR
GoPubMedPICSAR
iHOPPICSAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:21:19 CET 2017

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