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PIFO (primary cilia formation)

Identity

Alias_namesC1orf88
chromosome 1 open reading frame 88
Alias_symbol (synonym)FLJ23853
pitchfork
Other alias
HGNC (Hugo) PIFO
LocusID (NCBI) 128344
Atlas_Id 71907
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111889182 and ends at 111895639 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIFO   27009
Cards
Entrez_Gene (NCBI)PIFO  128344  primary cilia formation
AliasesC1orf88; pitchfork
GeneCards (Weizmann)PIFO
Ensembl hg19 (Hinxton)ENSG00000173947 [Gene_View]  chr1:111889182-111895639 [Contig_View]  PIFO [Vega]
Ensembl hg38 (Hinxton)ENSG00000173947 [Gene_View]  chr1:111889182-111895639 [Contig_View]  PIFO [Vega]
ICGC DataPortalENSG00000173947
TCGA cBioPortalPIFO
AceView (NCBI)PIFO
Genatlas (Paris)PIFO
WikiGenes128344
SOURCE (Princeton)PIFO
Genetics Home Reference (NIH)PIFO
Genomic and cartography
GoldenPath hg19 (UCSC)PIFO  -     chr1:111889182-111895639 +  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIFO  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblPIFO - 1p13.2 [CytoView hg19]  PIFO - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIPIFO [Mapview hg19]  PIFO [Mapview hg38]
OMIM614234   
Gene and transcription
Genbank (Entrez)AA021608 AI198934 AK074433 AK303897 AK310801
RefSeq transcript (Entrez)NM_001300831 NM_181643
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)PIFO
Cluster EST : UnigeneHs.172510 [ NCBI ]
CGAP (NCI)Hs.172510
Alternative Splicing GalleryENSG00000173947
Gene ExpressionPIFO [ NCBI-GEO ]   PIFO [ EBI - ARRAY_EXPRESS ]   PIFO [ SEEK ]   PIFO [ MEM ]
Gene Expression Viewer (FireBrowse)PIFO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128344
GTEX Portal (Tissue expression)PIFO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCI5
Splice isoforms : SwissVarQ8TCI5
PhosPhoSitePlusQ8TCI5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PIFO
DMDM Disease mutations128344
Blocks (Seattle)PIFO
SuperfamilyQ8TCI5
Human Protein AtlasENSG00000173947
Peptide AtlasQ8TCI5
HPRD14040
IPIIPI00328159   IPI00844336   IPI00514105   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCI5
IntAct (EBI)Q8TCI5
FunCoupENSG00000173947
BioGRIDPIFO
STRING (EMBL)PIFO
ZODIACPIFO
Ontologies - Pathways
QuickGOQ8TCI5
Ontology : AmiGOprotein binding  nucleus  trans-Golgi network  cytoplasmic membrane-bounded vesicle  Rab GTPase binding  kinesin binding  protein kinase binding  cell projection organization  regulation of cell projection organization  positive regulation of kinase activity  ciliary basal body  gamma-tubulin binding  beta-tubulin binding  
Ontology : EGO-EBIprotein binding  nucleus  trans-Golgi network  cytoplasmic membrane-bounded vesicle  Rab GTPase binding  kinesin binding  protein kinase binding  cell projection organization  regulation of cell projection organization  positive regulation of kinase activity  ciliary basal body  gamma-tubulin binding  beta-tubulin binding  
NDEx NetworkPIFO
Atlas of Cancer Signalling NetworkPIFO
Wikipedia pathwaysPIFO
Orthology - Evolution
OrthoDB128344
GeneTree (enSembl)ENSG00000173947
Phylogenetic Trees/Animal Genes : TreeFamPIFO
HOVERGENQ8TCI5
HOGENOMQ8TCI5
Homologs : HomoloGenePIFO
Homology/Alignments : Family Browser (UCSC)PIFO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIFO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIFO
dbVarPIFO
ClinVarPIFO
1000_GenomesPIFO 
Exome Variant ServerPIFO
ExAC (Exome Aggregation Consortium)PIFO (select the gene name)
Genetic variants : HAPMAP128344
Genomic Variants (DGV)PIFO [DGVbeta]
DECIPHER (Syndromes)1:111889182-111895639  ENSG00000173947
CONAN: Copy Number AnalysisPIFO 
Mutations
ICGC Data PortalPIFO 
TCGA Data PortalPIFO 
Broad Tumor PortalPIFO
OASIS PortalPIFO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIFO
BioMutasearch PIFO
DgiDB (Drug Gene Interaction Database)PIFO
DoCM (Curated mutations)PIFO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIFO (select a term)
intoGenPIFO
Cancer3DPIFO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614234   
Orphanet
MedgenPIFO
Genetic Testing Registry PIFO
NextProtQ8TCI5 [Medical]
TSGene128344
GENETestsPIFO
Huge Navigator PIFO [HugePedia]
snp3D : Map Gene to Disease128344
BioCentury BCIQPIFO
ClinGenPIFO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128344
Chemical/Pharm GKB GenePA142672472
Clinical trialPIFO
Miscellaneous
canSAR (ICR)PIFO (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIFO
EVEXPIFO
GoPubMedPIFO
iHOPPIFO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:38:36 CET 2017

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