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PIGAP1 (phosphatidylinositol glycan anchor biosynthesis class A pseudogene 1)

Identity

Other aliasPIG-A-II
HGNC (Hugo) PIGAP1
LocusID (NCBI) 5278
Atlas_Id 77357
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100578681 and ends at 100580276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PIGAP1   8958
Cards
Entrez_Gene (NCBI)PIGAP1  5278  phosphatidylinositol glycan anchor biosynthesis class A pseudogene 1
AliasesPIG-A-II
GeneCards (Weizmann)PIGAP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:100578681-100580276 [Contig_View]  PIGAP1 [Vega]
TCGA cBioPortalPIGAP1
AceView (NCBI)PIGAP1
Genatlas (Paris)PIGAP1
WikiGenes5278
SOURCE (Princeton)PIGAP1
Genetics Home Reference (NIH)PIGAP1
Genomic and cartography
GoldenPath hg38 (UCSC)PIGAP1  -     chr12:100578681-100580276 +  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGAP1  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblPIGAP1 - 12q23.1 [CytoView hg19]  PIGAP1 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIPIGAP1 [Mapview hg19]  PIGAP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)S78467
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGAP1
Cluster EST : UnigeneHs.20575 [ NCBI ]
CGAP (NCI)Hs.20575
Gene ExpressionPIGAP1 [ NCBI-GEO ]   PIGAP1 [ EBI - ARRAY_EXPRESS ]   PIGAP1 [ SEEK ]   PIGAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIGAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)5278
GTEX Portal (Tissue expression)PIGAP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PIGAP1
DMDM Disease mutations5278
Blocks (Seattle)PIGAP1
Protein Interaction databases
BioGRIDPIGAP1
STRING (EMBL)PIGAP1
ZODIACPIGAP1
Ontologies - Pathways
Huge Navigator PIGAP1 [HugePedia]
snp3D : Map Gene to Disease5278
BioCentury BCIQPIGAP1
ClinGenPIGAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5278
Chemical/Pharm GKB GenePA33289
Clinical trialPIGAP1
Miscellaneous
canSAR (ICR)PIGAP1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGAP1
EVEXPIGAP1
GoPubMedPIGAP1
iHOPPIGAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:22:30 CET 2017

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