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PIGBOS1 (PIGB opposite strand 1)

Identity

Other aliasHP06981
HGNC (Hugo) PIGBOS1
LocusID (NCBI) 101928527
Atlas_Id 77009
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55317184 and ends at 55319194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGBOS1   50696
Cards
Entrez_Gene (NCBI)PIGBOS1  101928527  PIGB opposite strand 1
AliasesHP06981
GeneCards (Weizmann)PIGBOS1
Ensembl hg19 (Hinxton)ENSG00000225973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225973 [Gene_View]  chr15:55317184-55319194 [Contig_View]  PIGBOS1 [Vega]
ICGC DataPortalENSG00000225973
TCGA cBioPortalPIGBOS1
AceView (NCBI)PIGBOS1
Genatlas (Paris)PIGBOS1
WikiGenes101928527
SOURCE (Princeton)PIGBOS1
Genetics Home Reference (NIH)PIGBOS1
Genomic and cartography
GoldenPath hg38 (UCSC)PIGBOS1  -     chr15:55317184-55319194 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGBOS1  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblPIGBOS1 - 15q21.3 [CytoView hg19]  PIGBOS1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIPIGBOS1 [Mapview hg19]  PIGBOS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593170 BQ434443 CA420894 HY126324
RefSeq transcript (Entrez)NM_001308421 NM_001308422 NM_001308423
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGBOS1
Cluster EST : UnigeneHs.493512 [ NCBI ]
CGAP (NCI)Hs.493512
Alternative Splicing GalleryENSG00000225973
Gene ExpressionPIGBOS1 [ NCBI-GEO ]   PIGBOS1 [ EBI - ARRAY_EXPRESS ]   PIGBOS1 [ SEEK ]   PIGBOS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIGBOS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928527
GTEX Portal (Tissue expression)PIGBOS1
Human Protein AtlasENSG00000225973-PIGBOS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A0B4J2F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A0B4J2F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A0B4J2F0
Splice isoforms : SwissVarA0A0B4J2F0
PhosPhoSitePlusA0A0B4J2F0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PIGBOS1
DMDM Disease mutations101928527
Blocks (Seattle)PIGBOS1
SuperfamilyA0A0B4J2F0
Human Protein Atlas [tissue]ENSG00000225973-PIGBOS1 [tissue]
Peptide AtlasA0A0B4J2F0
Protein Interaction databases
DIP (DOE-UCLA)A0A0B4J2F0
IntAct (EBI)A0A0B4J2F0
FunCoupENSG00000225973
BioGRIDPIGBOS1
STRING (EMBL)PIGBOS1
ZODIACPIGBOS1
Ontologies - Pathways
QuickGOA0A0B4J2F0
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPIGBOS1
Atlas of Cancer Signalling NetworkPIGBOS1
Wikipedia pathwaysPIGBOS1
Orthology - Evolution
OrthoDB101928527
GeneTree (enSembl)ENSG00000225973
Phylogenetic Trees/Animal Genes : TreeFamPIGBOS1
HOVERGENA0A0B4J2F0
HOGENOMA0A0B4J2F0
Homologs : HomoloGenePIGBOS1
Homology/Alignments : Family Browser (UCSC)PIGBOS1
Gene fusions - Rearrangements
Tumor Fusion PortalPIGBOS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGBOS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGBOS1
dbVarPIGBOS1
ClinVarPIGBOS1
1000_GenomesPIGBOS1 
Exome Variant ServerPIGBOS1
ExAC (Exome Aggregation Consortium)ENSG00000225973
GNOMAD BrowserENSG00000225973
Genetic variants : HAPMAP101928527
Genomic Variants (DGV)PIGBOS1 [DGVbeta]
DECIPHERPIGBOS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGBOS1 
Mutations
ICGC Data PortalPIGBOS1 
TCGA Data PortalPIGBOS1 
Broad Tumor PortalPIGBOS1
OASIS PortalPIGBOS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIGBOS1
BioMutasearch PIGBOS1
DgiDB (Drug Gene Interaction Database)PIGBOS1
DoCM (Curated mutations)PIGBOS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGBOS1 (select a term)
intoGenPIGBOS1
Cancer3DPIGBOS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPIGBOS1
MedgenPIGBOS1
Genetic Testing Registry PIGBOS1
NextProtA0A0B4J2F0 [Medical]
TSGene101928527
GENETestsPIGBOS1
Target ValidationPIGBOS1
Huge Navigator PIGBOS1 [HugePedia]
snp3D : Map Gene to Disease101928527
BioCentury BCIQPIGBOS1
ClinGenPIGBOS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928527
Clinical trialPIGBOS1
Miscellaneous
canSAR (ICR)PIGBOS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGBOS1
EVEXPIGBOS1
GoPubMedPIGBOS1
iHOPPIGBOS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:00 CET 2017

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