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PIGC (phosphatidylinositol glycan anchor biosynthesis, class C)

Identity

Other namesGPI2
HGNC (Hugo) PIGC
LocusID (NCBI) 5279
Location 1q24.3
Location_base_pair Starts at 172410597 and ends at 172413230 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PIGC   8960
Entrez_Gene (NCBI)PIGC  5279  phosphatidylinositol glycan anchor biosynthesis, class C
Cards
GeneCards (Weizmann)PIGC
Ensembl (Hinxton)ENSG00000135845 [Gene_View]  chr1:172410597-172413230 [Contig_View]  PIGC [Vega]
AceView (NCBI)PIGC
Genatlas (Paris)PIGC
SOURCE (Stanford)NM_002642 NM_153747
Genomic and cartography
GoldenPath (UCSC)PIGC  -  1q24.3   chr1:172410597-172413230 -  1q24.3   [Description]    (hg19-Feb_2009)
EnsemblPIGC - 1q24.3 [CytoView]
Mapping of homologs : NCBIPIGC [Mapview]
OMIM601730   
Gene and transcription
Genbank (Entrez)AA372370 AK308201 BC006539 BC063473 BG106700
RefSeq transcript (SRS)NM_002642 NM_153747
RefSeq transcript (Entrez)NM_002642 NM_153747
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
Consensus coding sequences : CCDS (NCBI)PIGC
Cluster EST : UnigeneHs.188456 [ SRS ] Hs.188456 [ NCBI ]
CGAP (NCI)Hs.188456
Alternative Splicing : Fast-db (Paris)GSHG0002739
Alternative Splicing GalleryENSG00000135845
Gene ExpressionPIGC [ NCBI-GEO ]   PIGC [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92535 (SRS) Q92535 (Uniprot)
NextProtQ92535
With graphics : InterProQ92535
Splice isoforms : SwissVarQ92535(Swissvar)
Domains : Interpro (SRS)Plno_GlcNAc_GPI2   
Domains : Interpro (EBI)Plno_GlcNAc_GPI2   
Related proteins : CluSTrQ92535
Domain families : Pfam (SRS)GPI2 (PF06432)   
Domain families : Pfam (Sanger)GPI2 (PF06432)   
Domain families : Pfam (NCBI)pfam06432   
DMDM5279
Blocks (Seattle)Q92535
Human Protein AtlasENSG00000135845
HPRD03433
IPIIPI00021948   IPI00023652   
Protein Interaction databases
DIP (DOE-UCLA)Q92535
IntAct (EBI)Q92535
FunCoupENSG00000135845
REACTOMEPIGC
Protein Interaction Database5279
BioGRIDPIGC
InParanoidQ92535
Interologous Interaction database Q92535
IntegromeDBPIGC
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PIGC
SNP (GeneSNP Utah)PIGC
SNP : HGBasePIGC
Genetic variants : HAPMAPPIGC
Somatic Mutations in Cancer : COSMICPIGC 
CONAN: Copy Number AnalysisPIGC 
Mutations and Diseases : HGMDPIGC
OMIM601730   
GENETests601730   
Disease Genetic AssociationPIGC
Huge Navigator PIGC [HugePedia]  PIGC [HugeCancerGEM]
Genomic VariantsPIGC  PIGC [DGVbeta]
snp3D : Map Gene to Disease5279
General knowledge
Homologs : HomoloGenePIGC
Homology/Alignments : Family Browser (UCSC)PIGC
Phylogenetic Trees/Animal Genes : TreeFamPIGC
Catalytic activity : Enzyme2.4.1.198 [ Enzyme-Expasy ]   2.4.1.198 [ Enzyme-SRS ]   2.4.1.198 [ IntEnz-EBI ]   2.4.1.198 [ BRENDA ]   2.4.1.198 [ KEGG ]   
Chemical/Protein Interactions : CTD5279
Chemical/Pharm GKB GenePA33291
Clinical trialPIGC
Cancer Resource (Charite)ENSG00000135845
Ontology : AmiGOglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  catalytic activity  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  integral to membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBIglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  catalytic activity  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  integral to membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesisGlycan structures - biosynthesis 2
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
PubGenePIGC
iHOPPIGC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:24:26 CEST 2013
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