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PIGF (phosphatidylinositol glycan anchor biosynthesis class F)

Identity

Alias (NCBI)-
HGNC (Hugo) PIGF
HGNC Previous namephosphatidylinositol glycan, class F
LocusID (NCBI) 5281
Atlas_Id 46661
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46580937 and ends at 46617041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGF (2p21)::C14orf159 (14q32.11)PIGF (2p21)::CHMP3 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIGF   8962
Cards
Entrez_Gene (NCBI)PIGF    phosphatidylinositol glycan anchor biosynthesis class F
Aliases
GeneCards (Weizmann)PIGF
Ensembl hg19 (Hinxton)ENSG00000151665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151665 [Gene_View]  ENSG00000151665 [Sequence]  chr2:46580937-46617041 [Contig_View]  PIGF [Vega]
ICGC DataPortalENSG00000151665
TCGA cBioPortalPIGF
AceView (NCBI)PIGF
Genatlas (Paris)PIGF
SOURCE (Princeton)PIGF
Genetics Home Reference (NIH)PIGF
Genomic and cartography
GoldenPath hg38 (UCSC)PIGF  -     chr2:46580937-46617041 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGF  -     2p21   [Description]    (hg19-Feb_2009)
GoldenPathPIGF - 2p21 [CytoView hg19]  PIGF - 2p21 [CytoView hg38]
ImmunoBaseENSG00000151665
Genome Data Viewer NCBIPIGF [Mapview hg19]  
OMIM600153   
Gene and transcription
Genbank (Entrez)AK291108 BC021725 BC029408 CR457000 D13435
RefSeq transcript (Entrez)NM_002643 NM_173074
Consensus coding sequences : CCDS (NCBI)PIGF
Gene ExpressionPIGF [ NCBI-GEO ]   PIGF [ EBI - ARRAY_EXPRESS ]   PIGF [ SEEK ]   PIGF [ MEM ]
Gene Expression Viewer (FireBrowse)PIGF [ Firebrowse - Broad ]
GenevisibleExpression of PIGF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5281
GTEX Portal (Tissue expression)PIGF
Human Protein AtlasENSG00000151665-PIGF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07326
PhosPhoSitePlusQ07326
Domains : Interpro (EBI)GPI_biosynthesis_protein_Pig-F   
Domain families : Pfam (Sanger)PIG-F (PF06699)   
Domain families : Pfam (NCBI)pfam06699   
Conserved Domain (NCBI)PIGF
SuperfamilyQ07326
AlphaFold pdb e-kbQ07326   
Human Protein Atlas [tissue]ENSG00000151665-PIGF [tissue]
HPRD02539
Protein Interaction databases
DIP (DOE-UCLA)Q07326
IntAct (EBI)Q07326
BioGRIDPIGF
STRING (EMBL)PIGF
ZODIACPIGF
Ontologies - Pathways
QuickGOQ07326
Ontology : AmiGOethanolaminephosphotransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannose-ethanolamine phosphotransferase activity  
Ontology : EGO-EBIethanolaminephosphotransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannose-ethanolamine phosphotransferase activity  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGF
Atlas of Cancer Signalling NetworkPIGF
Wikipedia pathwaysPIGF
Orthology - Evolution
OrthoDB5281
GeneTree (enSembl)ENSG00000151665
Phylogenetic Trees/Animal Genes : TreeFamPIGF
Homologs : HomoloGenePIGF
Homology/Alignments : Family Browser (UCSC)PIGF
Gene fusions - Rearrangements
Fusion : QuiverPIGF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGF
dbVarPIGF
ClinVarPIGF
MonarchPIGF
1000_GenomesPIGF 
Exome Variant ServerPIGF
GNOMAD BrowserENSG00000151665
Varsome BrowserPIGF
ACMGPIGF variants
VarityQ07326
Genomic Variants (DGV)PIGF [DGVbeta]
DECIPHERPIGF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGF 
Mutations
ICGC Data PortalPIGF 
TCGA Data PortalPIGF 
Broad Tumor PortalPIGF
OASIS PortalPIGF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPIGF
Mutations and Diseases : HGMDPIGF
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIGF
DgiDB (Drug Gene Interaction Database)PIGF
DoCM (Curated mutations)PIGF
CIViC (Clinical Interpretations of Variants in Cancer)PIGF
Cancer3DPIGF
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600153   
Orphanet
DisGeNETPIGF
MedgenPIGF
Genetic Testing Registry PIGF
NextProtQ07326 [Medical]
GENETestsPIGF
Target ValidationPIGF
Huge Navigator PIGF [HugePedia]
ClinGenPIGF
Clinical trials, drugs, therapy
MyCancerGenomePIGF
Protein Interactions : CTDPIGF
Pharm GKB GenePA33293
Pharm GKB PathwaysPA2032   
PharosQ07326
Clinical trialPIGF
Miscellaneous
canSAR (ICR)PIGF
HarmonizomePIGF
ARCHS4PIGF
DataMed IndexPIGF
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIGF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:27:24 CET 2022

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