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PIGF (phosphatidylinositol glycan anchor biosynthesis class F)

Identity

Alias_namesphosphatidylinositol glycan
Other alias-
HGNC (Hugo) PIGF
LocusID (NCBI) 5281
Atlas_Id 46661
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46581274 and ends at 46617112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGF (2p21) / C14orf159 (14q32.11)PIGF (2p21) / CHMP3 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGF   8962
Cards
Entrez_Gene (NCBI)PIGF  5281  phosphatidylinositol glycan anchor biosynthesis class F
Aliases
GeneCards (Weizmann)PIGF
Ensembl hg19 (Hinxton)ENSG00000151665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151665 [Gene_View]  chr2:46581274-46617112 [Contig_View]  PIGF [Vega]
ICGC DataPortalENSG00000151665
TCGA cBioPortalPIGF
AceView (NCBI)PIGF
Genatlas (Paris)PIGF
WikiGenes5281
SOURCE (Princeton)PIGF
Genetics Home Reference (NIH)PIGF
Genomic and cartography
GoldenPath hg38 (UCSC)PIGF  -     chr2:46581274-46617112 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGF  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblPIGF - 2p21 [CytoView hg19]  PIGF - 2p21 [CytoView hg38]
Mapping of homologs : NCBIPIGF [Mapview hg19]  PIGF [Mapview hg38]
OMIM600153   
Gene and transcription
Genbank (Entrez)AK291108 BC021725 BC029408 CR457000 D13435
RefSeq transcript (Entrez)NM_002643 NM_173074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGF
Cluster EST : UnigeneHs.468415 [ NCBI ]
CGAP (NCI)Hs.468415
Alternative Splicing GalleryENSG00000151665
Gene ExpressionPIGF [ NCBI-GEO ]   PIGF [ EBI - ARRAY_EXPRESS ]   PIGF [ SEEK ]   PIGF [ MEM ]
Gene Expression Viewer (FireBrowse)PIGF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5281
GTEX Portal (Tissue expression)PIGF
Human Protein AtlasENSG00000151665-PIGF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07326
Splice isoforms : SwissVarQ07326
PhosPhoSitePlusQ07326
Domains : Interpro (EBI)GPI_biosynthesis_protein_Pig-F   
Domain families : Pfam (Sanger)PIG-F (PF06699)   
Domain families : Pfam (NCBI)pfam06699   
Conserved Domain (NCBI)PIGF
DMDM Disease mutations5281
Blocks (Seattle)PIGF
SuperfamilyQ07326
Human Protein Atlas [tissue]ENSG00000151665-PIGF [tissue]
Peptide AtlasQ07326
HPRD02539
IPIIPI00016536   IPI00220276   IPI00916625   IPI00917869   IPI01014548   
Protein Interaction databases
DIP (DOE-UCLA)Q07326
IntAct (EBI)Q07326
FunCoupENSG00000151665
BioGRIDPIGF
STRING (EMBL)PIGF
ZODIACPIGF
Ontologies - Pathways
QuickGOQ07326
Ontology : AmiGOethanolaminephosphotransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  
Ontology : EGO-EBIethanolaminephosphotransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGF
Atlas of Cancer Signalling NetworkPIGF
Wikipedia pathwaysPIGF
Orthology - Evolution
OrthoDB5281
GeneTree (enSembl)ENSG00000151665
Phylogenetic Trees/Animal Genes : TreeFamPIGF
HOVERGENQ07326
HOGENOMQ07326
Homologs : HomoloGenePIGF
Homology/Alignments : Family Browser (UCSC)PIGF
Gene fusions - Rearrangements
Tumor Fusion PortalPIGF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGF
dbVarPIGF
ClinVarPIGF
1000_GenomesPIGF 
Exome Variant ServerPIGF
ExAC (Exome Aggregation Consortium)ENSG00000151665
GNOMAD BrowserENSG00000151665
Genetic variants : HAPMAP5281
Genomic Variants (DGV)PIGF [DGVbeta]
DECIPHERPIGF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGF 
Mutations
ICGC Data PortalPIGF 
TCGA Data PortalPIGF 
Broad Tumor PortalPIGF
OASIS PortalPIGF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGF
DgiDB (Drug Gene Interaction Database)PIGF
DoCM (Curated mutations)PIGF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGF (select a term)
intoGenPIGF
Cancer3DPIGF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600153   
Orphanet
DisGeNETPIGF
MedgenPIGF
Genetic Testing Registry PIGF
NextProtQ07326 [Medical]
TSGene5281
GENETestsPIGF
Target ValidationPIGF
Huge Navigator PIGF [HugePedia]
snp3D : Map Gene to Disease5281
BioCentury BCIQPIGF
ClinGenPIGF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5281
Chemical/Pharm GKB GenePA33293
Clinical trialPIGF
Miscellaneous
canSAR (ICR)PIGF (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGF
EVEXPIGF
GoPubMedPIGF
iHOPPIGF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:28:44 CET 2017

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