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PIGG (phosphatidylinositol glycan anchor biosynthesis, class G)

Identity

Alias_namesphosphatidylinositol glycan, class G
Alias_symbol (synonym)FLJ20265
GPI7
LAS21
Other aliasPRO4405
RLGS1930
HGNC (Hugo) PIGG
LocusID (NCBI) 54872
Atlas_Id 71908
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 492989 and ends at 533710 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PCGF3 (4p16.3) / PIGG (4p16.3)PIGG (4p16.3) / CHRDL2 (11q13.4)PIGG (4p16.3) / PIGG (4p16.3)
PIGG (4p16.3) / SPINK2 (4q12)ZNF264 (19q13.43) / PIGG (4p16.3)ZNF595 (4p16.3) / PIGG (4p16.3)
PCGF3 PIGGZNF264 PIGG

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGG   25985
Cards
Entrez_Gene (NCBI)PIGG  54872  phosphatidylinositol glycan anchor biosynthesis, class G
AliasesGPI7; LAS21; PRO4405; RLGS1930
GeneCards (Weizmann)PIGG
Ensembl hg19 (Hinxton)ENSG00000174227 [Gene_View]  chr4:492989-533710 [Contig_View]  PIGG [Vega]
Ensembl hg38 (Hinxton)ENSG00000174227 [Gene_View]  chr4:492989-533710 [Contig_View]  PIGG [Vega]
ICGC DataPortalENSG00000174227
TCGA cBioPortalPIGG
AceView (NCBI)PIGG
Genatlas (Paris)PIGG
WikiGenes54872
SOURCE (Princeton)PIGG
Genetics Home Reference (NIH)PIGG
Genomic and cartography
GoldenPath hg19 (UCSC)PIGG  -     chr4:492989-533710 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIGG  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblPIGG - 4p16.3 [CytoView hg19]  PIGG - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIPIGG [Mapview hg19]  PIGG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB162713 AK000272 AK027465 AK074715 AK074815
RefSeq transcript (Entrez)NM_001127178 NM_001289051 NM_001289052 NM_001289053 NM_001289055 NM_001289057 NM_017733
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929313
Consensus coding sequences : CCDS (NCBI)PIGG
Cluster EST : UnigeneHs.7099 [ NCBI ]
CGAP (NCI)Hs.7099
Alternative Splicing GalleryENSG00000174227
Gene ExpressionPIGG [ NCBI-GEO ]   PIGG [ EBI - ARRAY_EXPRESS ]   PIGG [ SEEK ]   PIGG [ MEM ]
Gene Expression Viewer (FireBrowse)PIGG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54872
GTEX Portal (Tissue expression)PIGG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H8A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H8A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H8A4
Splice isoforms : SwissVarQ5H8A4
Catalytic activity : Enzyme2.-.-.- [ Enzyme-Expasy ]   2.-.-.-2.-.-.- [ IntEnz-EBI ]   2.-.-.- [ BRENDA ]   2.-.-.- [ KEGG ]   
PhosPhoSitePlusQ5H8A4
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase_core    Phosphodiest/P_Trfase   
Domain families : Pfam (Sanger)Phosphodiest (PF01663)   
Domain families : Pfam (NCBI)pfam01663   
Conserved Domain (NCBI)PIGG
DMDM Disease mutations54872
Blocks (Seattle)PIGG
SuperfamilyQ5H8A4
Human Protein AtlasENSG00000174227
Peptide AtlasQ5H8A4
HPRD07890
IPIIPI00550703   IPI00745093   IPI00784025   IPI00783907   IPI00167361   IPI00978467   IPI00967993   IPI01015190   IPI00964418   IPI00965629   IPI00966272   IPI00966518   
Protein Interaction databases
DIP (DOE-UCLA)Q5H8A4
IntAct (EBI)Q5H8A4
FunCoupENSG00000174227
BioGRIDPIGG
STRING (EMBL)PIGG
ZODIACPIGG
Ontologies - Pathways
QuickGOQ5H8A4
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  membrane  preassembly of GPI anchor in ER membrane  phosphotransferase activity, for other substituted phosphate groups  integral component of endoplasmic reticulum membrane  post-translational protein modification  cellular protein metabolic process  CP2 mannose-ethanolamine phosphotransferase activity  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  membrane  preassembly of GPI anchor in ER membrane  phosphotransferase activity, for other substituted phosphate groups  integral component of endoplasmic reticulum membrane  post-translational protein modification  cellular protein metabolic process  CP2 mannose-ethanolamine phosphotransferase activity  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGG
Atlas of Cancer Signalling NetworkPIGG
Wikipedia pathwaysPIGG
Orthology - Evolution
OrthoDB54872
GeneTree (enSembl)ENSG00000174227
Phylogenetic Trees/Animal Genes : TreeFamPIGG
HOVERGENQ5H8A4
HOGENOMQ5H8A4
Homologs : HomoloGenePIGG
Homology/Alignments : Family Browser (UCSC)PIGG
Gene fusions - Rearrangements
Fusion: TCGAPCGF3 PIGG
Fusion: TCGAZNF264 PIGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGG
dbVarPIGG
ClinVarPIGG
1000_GenomesPIGG 
Exome Variant ServerPIGG
ExAC (Exome Aggregation Consortium)PIGG (select the gene name)
Genetic variants : HAPMAP54872
Genomic Variants (DGV)PIGG [DGVbeta]
DECIPHER (Syndromes)4:492989-533710  ENSG00000174227
CONAN: Copy Number AnalysisPIGG 
Mutations
ICGC Data PortalPIGG 
TCGA Data PortalPIGG 
Broad Tumor PortalPIGG
OASIS PortalPIGG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGG
DgiDB (Drug Gene Interaction Database)PIGG
DoCM (Curated mutations)PIGG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGG (select a term)
intoGenPIGG
Cancer3DPIGG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPIGG
Genetic Testing Registry PIGG
NextProtQ5H8A4 [Medical]
TSGene54872
GENETestsPIGG
Huge Navigator PIGG [HugePedia]
snp3D : Map Gene to Disease54872
BioCentury BCIQPIGG
ClinGenPIGG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54872
Chemical/Pharm GKB GenePA143485575
Clinical trialPIGG
Miscellaneous
canSAR (ICR)PIGG (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGG
EVEXPIGG
GoPubMedPIGG
iHOPPIGG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:38:37 CET 2017

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