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PIGM (phosphatidylinositol glycan anchor biosynthesis class M)

Identity

Alias_namesphosphatidylinositol glycan
Alias_symbol (synonym)GPI-MT-I
Other alias
HGNC (Hugo) PIGM
LocusID (NCBI) 93183
Atlas_Id 47094
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 160027672 and ends at 160031993 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KRTCAP2 (1q22) / PIGM (1q23.2)PIGM (1q23.2) / ZBTB7C (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGM   18858
Cards
Entrez_Gene (NCBI)PIGM  93183  phosphatidylinositol glycan anchor biosynthesis class M
AliasesGPI-MT-I
GeneCards (Weizmann)PIGM
Ensembl hg19 (Hinxton)ENSG00000143315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143315 [Gene_View]  chr1:160027672-160031993 [Contig_View]  PIGM [Vega]
ICGC DataPortalENSG00000143315
TCGA cBioPortalPIGM
AceView (NCBI)PIGM
Genatlas (Paris)PIGM
WikiGenes93183
SOURCE (Princeton)PIGM
Genetics Home Reference (NIH)PIGM
Genomic and cartography
GoldenPath hg38 (UCSC)PIGM  -     chr1:160027672-160031993 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGM  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblPIGM - 1q23.2 [CytoView hg19]  PIGM - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIPIGM [Mapview hg19]  PIGM [Mapview hg38]
OMIM610273   610293   
Gene and transcription
Genbank (Entrez)AB028127 AK074655 BC001803 BC011395 BC019865
RefSeq transcript (Entrez)NM_145167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGM
Cluster EST : UnigeneHs.552810 [ NCBI ]
CGAP (NCI)Hs.552810
Alternative Splicing GalleryENSG00000143315
Gene ExpressionPIGM [ NCBI-GEO ]   PIGM [ EBI - ARRAY_EXPRESS ]   PIGM [ SEEK ]   PIGM [ MEM ]
Gene Expression Viewer (FireBrowse)PIGM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93183
GTEX Portal (Tissue expression)PIGM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3S5
Splice isoforms : SwissVarQ9H3S5
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9H3S5
Domains : Interpro (EBI)Mannosyltransferase_DXD   
Domain families : Pfam (Sanger)Mannosyl_trans (PF05007)   
Domain families : Pfam (NCBI)pfam05007   
Conserved Domain (NCBI)PIGM
DMDM Disease mutations93183
Blocks (Seattle)PIGM
SuperfamilyQ9H3S5
Human Protein AtlasENSG00000143315
Peptide AtlasQ9H3S5
HPRD15133
IPIIPI00024023   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3S5
IntAct (EBI)Q9H3S5
FunCoupENSG00000143315
BioGRIDPIGM
STRING (EMBL)PIGM
ZODIACPIGM
Ontologies - Pathways
QuickGOQ9H3S5
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  transferase activity, transferring hexosyl groups  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  transferase activity, transferring hexosyl groups  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGM
Atlas of Cancer Signalling NetworkPIGM
Wikipedia pathwaysPIGM
Orthology - Evolution
OrthoDB93183
GeneTree (enSembl)ENSG00000143315
Phylogenetic Trees/Animal Genes : TreeFamPIGM
HOVERGENQ9H3S5
HOGENOMQ9H3S5
Homologs : HomoloGenePIGM
Homology/Alignments : Family Browser (UCSC)PIGM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGM
dbVarPIGM
ClinVarPIGM
1000_GenomesPIGM 
Exome Variant ServerPIGM
ExAC (Exome Aggregation Consortium)PIGM (select the gene name)
Genetic variants : HAPMAP93183
Genomic Variants (DGV)PIGM [DGVbeta]
DECIPHERPIGM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGM 
Mutations
ICGC Data PortalPIGM 
TCGA Data PortalPIGM 
Broad Tumor PortalPIGM
OASIS PortalPIGM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGM
DgiDB (Drug Gene Interaction Database)PIGM
DoCM (Curated mutations)PIGM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGM (select a term)
intoGenPIGM
Cancer3DPIGM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610273    610293   
Orphanet11601   
MedgenPIGM
Genetic Testing Registry PIGM
NextProtQ9H3S5 [Medical]
TSGene93183
GENETestsPIGM
Huge Navigator PIGM [HugePedia]
snp3D : Map Gene to Disease93183
BioCentury BCIQPIGM
ClinGenPIGM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93183
Chemical/Pharm GKB GenePA38718
Clinical trialPIGM
Miscellaneous
canSAR (ICR)PIGM (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGM
EVEXPIGM
GoPubMedPIGM
iHOPPIGM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:31:12 CEST 2017

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