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PIGO (phosphatidylinositol glycan anchor biosynthesis, class O)

Identity

Other namesHPMRS2
HGNC (Hugo) PIGO
LocusID (NCBI) 84720
Location 9p13.3
Location_base_pair Starts at 35088685 and ends at 35096546 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PIGO   23215
Cards
Entrez_Gene (NCBI)PIGO  84720  phosphatidylinositol glycan anchor biosynthesis, class O
GeneCards (Weizmann)PIGO
Ensembl (Hinxton)ENSG00000165282 [Gene_View]  chr9:35088685-35096546 [Contig_View]  PIGO [Vega]
ICGC DataPortalENSG00000165282
cBioPortalPIGO
AceView (NCBI)PIGO
Genatlas (Paris)PIGO
WikiGenes84720
SOURCE (Princeton)NM_001201484 NM_032634 NM_152850
Genomic and cartography
GoldenPath (UCSC)PIGO  -  9p13.3   chr9:35088685-35096546 -  9p13.3   [Description]    (hg19-Feb_2009)
EnsemblPIGO - 9p13.3 [CytoView]
Mapping of homologs : NCBIPIGO [Mapview]
OMIM614730   614749   
Gene and transcription
Genbank (Entrez)AK074064 AK090433 AL833956 AW149348 AY358472
RefSeq transcript (Entrez)NM_001201484 NM_032634 NM_152850
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_031990 NT_008413 NW_001839149 NW_004929342
Consensus coding sequences : CCDS (NCBI)PIGO
Cluster EST : UnigeneHs.735712 [ NCBI ]
CGAP (NCI)Hs.735712
Alternative Splicing : Fast-db (Paris)GSHG0030782
Alternative Splicing GalleryENSG00000165282
Gene ExpressionPIGO [ NCBI-GEO ]     PIGO [ SEEK ]   PIGO [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEQ8 (Uniprot)
NextProtQ8TEQ8  [Medical]
With graphics : InterProQ8TEQ8
Splice isoforms : SwissVarQ8TEQ8 (Swissvar)
Catalytic activity : Enzyme2.-.-.- [ Enzyme-Expasy ]   2.-.-.-2.-.-.- [ IntEnz-EBI ]   2.-.-.- [ BRENDA ]   2.-.-.- [ KEGG ]   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a [organisation]   Alkaline_phosphatase_core [organisation]   Phosphodiest/P_Trfase [organisation]  
Related proteins : CluSTrQ8TEQ8
Domain families : Pfam (Sanger)Phosphodiest (PF01663)   
Domain families : Pfam (NCBI)pfam01663   
DMDM Disease mutations84720
Blocks (Seattle)Q8TEQ8
Human Protein AtlasENSG00000165282 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8TEQ8
HPRD15134
IPIIPI00217421   IPI00181620   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEQ8
IntAct (EBI)Q8TEQ8
FunCoupENSG00000165282
BioGRIDPIGO
InParanoidQ8TEQ8
Interologous Interaction database Q8TEQ8
IntegromeDBPIGO
STRING (EMBL)PIGO
Ontologies - Pathways
Ontology : AmiGOmolecular_function  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  transferase activity  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum membrane  C-terminal protein lipidation  GPI anchor biosynthetic process  membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  transferase activity  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
Protein Interaction DatabasePIGO
Wikipedia pathwaysPIGO
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PIGO
snp3D : Map Gene to Disease84720
SNP (GeneSNP Utah)PIGO
SNP : HGBasePIGO
Genetic variants : HAPMAPPIGO
Exome VariantPIGO
1000_GenomesPIGO 
ICGC programENSG00000165282 
Somatic Mutations in Cancer : COSMICPIGO 
CONAN: Copy Number AnalysisPIGO 
Mutations and Diseases : HGMDPIGO
Mutations and Diseases : intOGenPIGO
Genomic VariantsPIGO  PIGO [DGVbeta]
dbVarPIGO
ClinVarPIGO
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM614730    614749   
MedgenPIGO
GENETestsPIGO
Disease Genetic AssociationPIGO
Huge Navigator PIGO [HugePedia]  PIGO [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePIGO
Homology/Alignments : Family Browser (UCSC)PIGO
Phylogenetic Trees/Animal Genes : TreeFamPIGO
Chemical/Protein Interactions : CTD84720
Chemical/Pharm GKB GenePA134993507
Clinical trialPIGO
Cancer Resource (Charite)ENSG00000165282
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMinePIGO
iHOPPIGO
OncoSearchPIGO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:59:40 CEST 2014

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