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PIGO (phosphatidylinositol glycan anchor biosynthesis class O)

Identity

Other namesHPMRS2
HGNC (Hugo) PIGO
LocusID (NCBI) 84720
Atlas_Id 47343
Location 9p13.3
Location_base_pair Starts at 35088685 and ends at 35096546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGO   23215
Cards
Entrez_Gene (NCBI)PIGO  84720  phosphatidylinositol glycan anchor biosynthesis class O
GeneCards (Weizmann)PIGO
Ensembl hg19 (Hinxton)ENSG00000165282 [Gene_View]  chr9:35088685-35096546 [Contig_View]  PIGO [Vega]
Ensembl hg38 (Hinxton)ENSG00000165282 [Gene_View]  chr9:35088685-35096546 [Contig_View]  PIGO [Vega]
ICGC DataPortalENSG00000165282
TCGA cBioPortalPIGO
AceView (NCBI)PIGO
Genatlas (Paris)PIGO
WikiGenes84720
SOURCE (Princeton)PIGO
Genomic and cartography
GoldenPath hg19 (UCSC)PIGO  -     chr9:35088685-35096546 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIGO  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblPIGO - 9p13.3 [CytoView hg19]  PIGO - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIPIGO [Mapview hg19]  PIGO [Mapview hg38]
OMIM614730   614749   
Gene and transcription
Genbank (Entrez)AK074064 AK090433 AL833956 AW149348 AY358472
RefSeq transcript (Entrez)NM_001201484 NM_032634 NM_152850
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_031990 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)PIGO
Cluster EST : UnigeneHs.735712 [ NCBI ]
CGAP (NCI)Hs.735712
Alternative Splicing : Fast-db (Paris)GSHG0030782
Alternative Splicing GalleryENSG00000165282
Gene ExpressionPIGO [ NCBI-GEO ]   PIGO [ EBI - ARRAY_EXPRESS ]   PIGO [ SEEK ]   PIGO [ MEM ]
Gene Expression Viewer (FireBrowse)PIGO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84720
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEQ8 (Uniprot)
NextProtQ8TEQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEQ8
Splice isoforms : SwissVarQ8TEQ8 (Swissvar)
Catalytic activity : Enzyme2.-.-.- [ Enzyme-Expasy ]   2.-.-.-2.-.-.- [ IntEnz-EBI ]   2.-.-.- [ BRENDA ]   2.-.-.- [ KEGG ]   
PhosPhoSitePlusQ8TEQ8
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase_core    Phosphodiest/P_Trfase   
Domain families : Pfam (Sanger)Phosphodiest (PF01663)   
Domain families : Pfam (NCBI)pfam01663   
DMDM Disease mutations84720
Blocks (Seattle)PIGO
SuperfamilyQ8TEQ8
Human Protein AtlasENSG00000165282
Peptide AtlasQ8TEQ8
HPRD15134
IPIIPI00217421   IPI00181620   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEQ8
IntAct (EBI)Q8TEQ8
FunCoupENSG00000165282
BioGRIDPIGO
STRING (EMBL)PIGO
ZODIACPIGO
Ontologies - Pathways
QuickGOQ8TEQ8
Ontology : AmiGOmolecular_function  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  membrane  integral component of membrane  mannose-ethanolamine phosphotransferase activity  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  membrane  integral component of membrane  mannose-ethanolamine phosphotransferase activity  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx Network
Atlas of Cancer Signalling NetworkPIGO
Wikipedia pathwaysPIGO
Orthology - Evolution
OrthoDB84720
GeneTree (enSembl)ENSG00000165282
Phylogenetic Trees/Animal Genes : TreeFamPIGO
Homologs : HomoloGenePIGO
Homology/Alignments : Family Browser (UCSC)PIGO
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerPIGO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGO
dbVarPIGO
ClinVarPIGO
1000_GenomesPIGO 
Exome Variant ServerPIGO
ExAC (Exome Aggregation Consortium)PIGO (select the gene name)
SNP (GeneSNP Utah)PIGO
SNP : HGBasePIGO
Genetic variants : HAPMAPPIGO
Genomic Variants (DGV)PIGO [DGVbeta]
Mutations
ICGC Data PortalPIGO 
TCGA Data PortalPIGO 
Broad Tumor PortalPIGO
OASIS PortalPIGO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGO 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch PIGO
DgiDB (Drug Gene Interaction Database)PIGO
DoCM (Curated mutations)PIGO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGO (select a term)
intoGenPIGO
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:35088685-35096546
CONAN: Copy Number AnalysisPIGO 
Mutations and Diseases : HGMDPIGO
OMIM614730    614749   
MedgenPIGO
Genetic Testing Registry PIGO
NextProtQ8TEQ8 [Medical]
TSGene84720
GENETestsPIGO
Huge Navigator PIGO [HugePedia]  PIGO [HugeCancerGEM]
snp3D : Map Gene to Disease84720
BioCentury BCIQPIGO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84720
Chemical/Pharm GKB GenePA134993507
Clinical trialPIGO
Miscellaneous
canSAR (ICR)PIGO (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGO
GoPubMedPIGO
iHOPPIGO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:58:42 CEST 2016

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