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PIGP (phosphatidylinositol glycan anchor biosynthesis class P)

Identity

Alias_namesDSCR5
Down syndrome critical region gene 5
phosphatidylinositol glycan, class P
Alias_symbol (synonym)DCRC
DSRC
Other aliasDCRC-S
PIG-P
HGNC (Hugo) PIGP
LocusID (NCBI) 51227
Atlas_Id 47084
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 37065364 and ends at 37073158 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGP (21q22.13) / CEMIP (15q25.1)PMEPA1 (20q13.31) / PIGP (21q22.13)PMEPA1 20q13.31 / PIGP 21q22.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGP   3046
Cards
Entrez_Gene (NCBI)PIGP  51227  phosphatidylinositol glycan anchor biosynthesis class P
aliasus¼/TD>DCRC; DCRC-S; DSCR5; DSRC; 
PIG-P
GeneCards (Weizmann)PIGP
Ensembl hg19 (Hinxton)ENSG00000185808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185808 [Gene_View]  chr21:37065364-37073158 [Contig_View]  PIGP [Vega]
ICGC DataPortalENSG00000185808
TCGA cBioPortalPIGP
AceView (NCBI)PIGP
Genatlas (Paris)PIGP
WikiGenes51227
SOURCE (Princeton)PIGP
Genetics Home Reference (NIH)PIGP
Genomic and cartography
GoldenPath hg38 (UCSC)PIGP  -     chr21:37065364-37073158 -  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGP  -     21q22.13   [Description]    (hg19-Feb_2009)
EnsemblPIGP - 21q22.13 [CytoView hg19]  PIGP - 21q22.13 [CytoView hg38]
Mapping of homologs : NCBIPIGP [Mapview hg19]  PIGP [Mapview hg38]
OMIM605938   
Gene and transcription
Genbank (Entrez)AB035742 AB035743 AB035744 AB035745 AB037162
RefSeq transcript (Entrez)NM_001320480 NM_016430 NM_153681 NM_153682
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGP
Cluster EST : UnigeneHs.716087 [ NCBI ]
CGAP (NCI)Hs.716087
Alternative Splicing GalleryENSG00000185808
Gene ExpressionPIGP [ NCBI-GEO ]   PIGP [ EBI - ARRAY_EXPRESS ]   PIGP [ SEEK ]   PIGP [ MEM ]
Gene Expression Viewer (FireBrowse)PIGP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51227
GTEX Portal (Tissue expression)PIGP
Human Protein AtlasENSG00000185808-PIGP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57054   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57054  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57054
Splice isoforms : SwissVarP57054
Catalytic activity : Enzyme2.4.1.198 [ Enzyme-Expasy ]   2.4.1.1982.4.1.198 [ IntEnz-EBI ]   2.4.1.198 [ BRENDA ]   2.4.1.198 [ KEGG ]   
PhosPhoSitePlusP57054
Domains : Interpro (EBI)PIG-P    PIG-P_GPI19   
Domain families : Pfam (Sanger)PIG-P (PF08510)   
Domain families : Pfam (NCBI)pfam08510   
Conserved Domain (NCBI)PIGP
DMDM Disease mutations51227
Blocks (Seattle)PIGP
SuperfamilyP57054
Human Protein Atlas [tissue]ENSG00000185808-PIGP [tissue]
Peptide AtlasP57054
HPRD05806
IPIIPI00304806   IPI00171720   IPI00414749   IPI00790807   
Protein Interaction databases
DIP (DOE-UCLA)P57054
IntAct (EBI)P57054
FunCoupENSG00000185808
BioGRIDPIGP
STRING (EMBL)PIGP
ZODIACPIGP
Ontologies - Pathways
QuickGOP57054
Ontology : AmiGOglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  
Ontology : EGO-EBIglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGP
Atlas of Cancer Signalling NetworkPIGP
Wikipedia pathwaysPIGP
Orthology - Evolution
OrthoDB51227
GeneTree (enSembl)ENSG00000185808
Phylogenetic Trees/Animal Genes : TreeFamPIGP
HOVERGENP57054
HOGENOMP57054
Homologs : HomoloGenePIGP
Homology/Alignments : Family Browser (UCSC)PIGP
Gene fusions - Rearrangements
Fusion : MitelmanPMEPA1/PIGP [20q13.31/21q22.13]  [t(20;21)(q13;q22)]  
Fusion: TCGAPMEPA1 20q13.31 PIGP 21q22.13 BRCA
Fusion: Tumor Portal PIGP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGP
dbVarPIGP
ClinVarPIGP
1000_GenomesPIGP 
Exome Variant ServerPIGP
ExAC (Exome Aggregation Consortium)ENSG00000185808
GNOMAD BrowserENSG00000185808
Genetic variants : HAPMAP51227
Genomic Variants (DGV)PIGP [DGVbeta]
DECIPHERPIGP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGP 
Mutations
ICGC Data PortalPIGP 
TCGA Data PortalPIGP 
Broad Tumor PortalPIGP
OASIS PortalPIGP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGP
DgiDB (Drug Gene Interaction Database)PIGP
DoCM (Curated mutations)PIGP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGP (select a term)
intoGenPIGP
Cancer3DPIGP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605938   
Orphanet
MedgenPIGP
Genetic Testing Registry PIGP
NextProtP57054 [Medical]
TSGene51227
GENETestsPIGP
Target ValidationPIGP
Huge Navigator PIGP [HugePedia]
snp3D : Map Gene to Disease51227
BioCentury BCIQPIGP
ClinGenPIGP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51227
Chemical/Pharm GKB GenePA27498
Clinical trialPIGP
Miscellaneous
canSAR (ICR)PIGP (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGP
EVEXPIGP
GoPubMedPIGP
iHOPPIGP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:05:06 CET 2017

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