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PIGQ (phosphatidylinositol glycan anchor biosynthesis, class Q)

Identity

Other namesGPI1
c407A10.1
HGNC (Hugo) PIGQ
LocusID (NCBI) 9091
Location 16p13.3
Location_base_pair Starts at 619968 and ends at 634136 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PIGQ   14135
Entrez_Gene (NCBI)PIGQ  9091  phosphatidylinositol glycan anchor biosynthesis, class Q
Cards
GeneCards (Weizmann)PIGQ
Ensembl (Hinxton)ENSG00000007541 [Gene_View]  chr16:619968-634136 [Contig_View]  PIGQ [Vega]
AceView (NCBI)PIGQ
Genatlas (Paris)PIGQ
SOURCE (Stanford)NM_004204 NM_148920
Genomic and cartography
GoldenPath (UCSC)PIGQ  -  16p13.3   chr16:619968-634136 +  16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPIGQ - 16p13.3 [CytoView]
Mapping of homologs : NCBIPIGQ [Mapview]
OMIM605754   
Gene and transcription
Genbank (Entrez)AB003723 AF030177 AK055163 AK092073 AK300297
RefSeq transcript (SRS)NM_004204 NM_148920
RefSeq transcript (Entrez)NM_004204 NM_148920
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838339 NW_004078085
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838339 NW_004078085
Consensus coding sequences : CCDS (NCBI)PIGQ
Cluster EST : UnigeneHs.744949 [ SRS ] Hs.744949 [ NCBI ]
CGAP (NCI)Hs.744949
Alternative Splicing : Fast-db (Paris)GSHG0010804
Alternative Splicing GalleryENSG00000007541
Gene ExpressionPIGQ [ NCBI-GEO ]   PIGQ [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRB3 (SRS) Q9BRB3 (Uniprot)
NextProtQ9BRB3
With graphics : InterProQ9BRB3
Splice isoforms : SwissVarQ9BRB3(Swissvar)
Domains : Interpro (SRS)GlcNAc_Gpi1   
Domains : Interpro (EBI)GlcNAc_Gpi1   
Related proteins : CluSTrQ9BRB3
Domain families : Pfam (SRS)Gpi1 (PF05024)   
Domain families : Pfam (Sanger)Gpi1 (PF05024)   
Domain families : Pfam (NCBI)pfam05024   
DMDM9091
Blocks (Seattle)Q9BRB3
Human Protein AtlasENSG00000007541
HPRD09307
IPIIPI00009447   IPI00163323   IPI00062113   IPI00154489   IPI00922634   IPI00917183   IPI00917392   IPI01009843   IPI01012020   IPI00910554   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRB3
IntAct (EBI)Q9BRB3
FunCoupENSG00000007541
REACTOMEPIGQ
Protein Interaction Database9091
BioGRIDPIGQ
InParanoidQ9BRB3
Interologous Interaction database Q9BRB3
IntegromeDBPIGQ
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PIGQ
SNP (GeneSNP Utah)PIGQ
SNP : HGBasePIGQ
Genetic variants : HAPMAPPIGQ
Somatic Mutations in Cancer : COSMICPIGQ 
CONAN: Copy Number AnalysisPIGQ 
Mutations and Diseases : HGMDPIGQ
OMIM605754   
GENETests605754   
Disease Genetic AssociationPIGQ
Huge Navigator PIGQ [HugePedia]  PIGQ [HugeCancerGEM]
Genomic VariantsPIGQ  PIGQ [DGVbeta]
ClinVarPIGQ
snp3D : Map Gene to Disease9091
General knowledge
Homologs : HomoloGenePIGQ
Homology/Alignments : Family Browser (UCSC)PIGQ
Phylogenetic Trees/Animal Genes : TreeFamPIGQ
Catalytic activity : Enzyme2.4.1.198 [ Enzyme-Expasy ]   2.4.1.198 [ Enzyme-SRS ]   2.4.1.198 [ IntEnz-EBI ]   2.4.1.198 [ BRENDA ]   2.4.1.198 [ KEGG ]   
Chemical/Protein Interactions : CTD9091
Chemical/Pharm GKB GenePA33299
Clinical trialPIGQ
Cancer Resource (Charite)ENSG00000007541
Ontology : AmiGOglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  carbohydrate metabolic process  C-terminal protein lipidation  integral to membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBIglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  carbohydrate metabolic process  C-terminal protein lipidation  integral to membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGGlycan structures - biosynthesis 2Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGenePIGQ
iHOPPIGQ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:32:37 CEST 2013
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