Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PIGQ (phosphatidylinositol glycan anchor biosynthesis class Q)

Identity

Alias_namesphosphatidylinositol glycan
Alias_symbol (synonym)hGPI1
GPI1
Other aliasc407A10.1
HGNC (Hugo) PIGQ
LocusID (NCBI) 9091
Atlas_Id 46932
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 569968 and ends at 584136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CTSA (20q13.12) / PIGQ (16p13.3)PIGQ (16p13.3) / TMEM241 (18q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PIGQ   14135
Cards
Entrez_Gene (NCBI)PIGQ  9091  phosphatidylinositol glycan anchor biosynthesis class Q
AliasesGPI1; c407A10.1
GeneCards (Weizmann)PIGQ
Ensembl hg19 (Hinxton)ENSG00000007541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007541 [Gene_View]  chr16:569968-584136 [Contig_View]  PIGQ [Vega]
ICGC DataPortalENSG00000007541
TCGA cBioPortalPIGQ
AceView (NCBI)PIGQ
Genatlas (Paris)PIGQ
WikiGenes9091
SOURCE (Princeton)PIGQ
Genetics Home Reference (NIH)PIGQ
Genomic and cartography
GoldenPath hg38 (UCSC)PIGQ  -     chr16:569968-584136 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGQ  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPIGQ - 16p13.3 [CytoView hg19]  PIGQ - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPIGQ [Mapview hg19]  PIGQ [Mapview hg38]
OMIM605754   
Gene and transcription
Genbank (Entrez)AB003723 AF030177 AK055163 AK092073 AK300297
RefSeq transcript (Entrez)NM_004204 NM_148920
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGQ
Cluster EST : UnigeneHs.744949 [ NCBI ]
CGAP (NCI)Hs.744949
Alternative Splicing GalleryENSG00000007541
Gene ExpressionPIGQ [ NCBI-GEO ]   PIGQ [ EBI - ARRAY_EXPRESS ]   PIGQ [ SEEK ]   PIGQ [ MEM ]
Gene Expression Viewer (FireBrowse)PIGQ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9091
GTEX Portal (Tissue expression)PIGQ
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRB3
Splice isoforms : SwissVarQ9BRB3
Catalytic activity : Enzyme2.4.1.198 [ Enzyme-Expasy ]   2.4.1.1982.4.1.198 [ IntEnz-EBI ]   2.4.1.198 [ BRENDA ]   2.4.1.198 [ KEGG ]   
PhosPhoSitePlusQ9BRB3
Domains : Interpro (EBI)GlcNAc_Gpi1   
Domain families : Pfam (Sanger)Gpi1 (PF05024)   
Domain families : Pfam (NCBI)pfam05024   
Conserved Domain (NCBI)PIGQ
DMDM Disease mutations9091
Blocks (Seattle)PIGQ
SuperfamilyQ9BRB3
Human Protein AtlasENSG00000007541
Peptide AtlasQ9BRB3
HPRD09307
IPIIPI00009447   IPI00163323   IPI00062113   IPI00154489   IPI00922634   IPI00917183   IPI00917392   IPI01009843   IPI01012020   IPI00910554   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRB3
IntAct (EBI)Q9BRB3
FunCoupENSG00000007541
BioGRIDPIGQ
STRING (EMBL)PIGQ
ZODIACPIGQ
Ontologies - Pathways
QuickGOQ9BRB3
Ontology : AmiGOglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  carbohydrate metabolic process  integral component of membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  
Ontology : EGO-EBIglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  endoplasmic reticulum membrane  carbohydrate metabolic process  integral component of membrane  preassembly of GPI anchor in ER membrane  phosphatidylinositol N-acetylglucosaminyltransferase activity  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGQ
Atlas of Cancer Signalling NetworkPIGQ
Wikipedia pathwaysPIGQ
Orthology - Evolution
OrthoDB9091
GeneTree (enSembl)ENSG00000007541
Phylogenetic Trees/Animal Genes : TreeFamPIGQ
HOVERGENQ9BRB3
HOGENOMQ9BRB3
Homologs : HomoloGenePIGQ
Homology/Alignments : Family Browser (UCSC)PIGQ
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGQ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGQ
dbVarPIGQ
ClinVarPIGQ
1000_GenomesPIGQ 
Exome Variant ServerPIGQ
ExAC (Exome Aggregation Consortium)PIGQ (select the gene name)
Genetic variants : HAPMAP9091
Genomic Variants (DGV)PIGQ [DGVbeta]
DECIPHERPIGQ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGQ 
Mutations
ICGC Data PortalPIGQ 
TCGA Data PortalPIGQ 
Broad Tumor PortalPIGQ
OASIS PortalPIGQ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGQ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGQ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGQ
DgiDB (Drug Gene Interaction Database)PIGQ
DoCM (Curated mutations)PIGQ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGQ (select a term)
intoGenPIGQ
Cancer3DPIGQ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605754   
Orphanet889   
MedgenPIGQ
Genetic Testing Registry PIGQ
NextProtQ9BRB3 [Medical]
TSGene9091
GENETestsPIGQ
Target ValidationPIGQ
Huge Navigator PIGQ [HugePedia]
snp3D : Map Gene to Disease9091
BioCentury BCIQPIGQ
ClinGenPIGQ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9091
Chemical/Pharm GKB GenePA33299
Clinical trialPIGQ
Miscellaneous
canSAR (ICR)PIGQ (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGQ
EVEXPIGQ
GoPubMedPIGQ
iHOPPIGQ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:49:27 CEST 2017
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