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PIGR (polymeric immunoglobulin receptor)

Identity

Other alias-
HGNC (Hugo) PIGR
LocusID (NCBI) 5284
Atlas_Id 46253
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 207101867 and ends at 207119811 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTG1 (17q25.3) / PIGR (1q32.1)PIGR (1q32.1) / DNAJC5 (20q13.33)PIGR (1q32.1) / FAM3D (3p14.2)
PIGR (1q32.1) / GIF (11q12.1)PIGR (1q32.1) / NPIPB7 (16q23.1)PIGR (1q32.1) / PIGR (1q32.1)
PIGR (1q32.1) / SERP2 (13q14.11)RRP12 (10q24.1) / PIGR (1q32.1)SQSTM1 (5q35.3) / PIGR (1q32.1)
VCP (9p13.3) / PIGR (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGR   8968
Cards
Entrez_Gene (NCBI)PIGR  5284  polymeric immunoglobulin receptor
Aliases
GeneCards (Weizmann)PIGR
Ensembl hg19 (Hinxton)ENSG00000162896 [Gene_View]  chr1:207101867-207119811 [Contig_View]  PIGR [Vega]
Ensembl hg38 (Hinxton)ENSG00000162896 [Gene_View]  chr1:207101867-207119811 [Contig_View]  PIGR [Vega]
ICGC DataPortalENSG00000162896
TCGA cBioPortalPIGR
AceView (NCBI)PIGR
Genatlas (Paris)PIGR
WikiGenes5284
SOURCE (Princeton)PIGR
Genetics Home Reference (NIH)PIGR
Genomic and cartography
GoldenPath hg19 (UCSC)PIGR  -     chr1:207101867-207119811 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIGR  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblPIGR - 1q32.1 [CytoView hg19]  PIGR - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIPIGR [Mapview hg19]  PIGR [Mapview hg38]
OMIM173880   
Gene and transcription
Genbank (Entrez)AF272149 AK225471 AK310199 AY178835 BC110061
RefSeq transcript (Entrez)NM_002644
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_012927 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)PIGR
Cluster EST : UnigeneHs.497589 [ NCBI ]
CGAP (NCI)Hs.497589
Alternative Splicing GalleryENSG00000162896
Gene ExpressionPIGR [ NCBI-GEO ]   PIGR [ EBI - ARRAY_EXPRESS ]   PIGR [ SEEK ]   PIGR [ MEM ]
Gene Expression Viewer (FireBrowse)PIGR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5284
GTEX Portal (Tissue expression)PIGR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01833   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01833  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01833
Splice isoforms : SwissVarP01833
PhosPhoSitePlusP01833
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)PIGR
DMDM Disease mutations5284
Blocks (Seattle)PIGR
PDB (SRS)1XED    2OCW    3CHN    3CM9   
PDB (PDBSum)1XED    2OCW    3CHN    3CM9   
PDB (IMB)1XED    2OCW    3CHN    3CM9   
PDB (RSDB)1XED    2OCW    3CHN    3CM9   
Structural Biology KnowledgeBase1XED    2OCW    3CHN    3CM9   
SCOP (Structural Classification of Proteins)1XED    2OCW    3CHN    3CM9   
CATH (Classification of proteins structures)1XED    2OCW    3CHN    3CM9   
SuperfamilyP01833
Human Protein AtlasENSG00000162896
Peptide AtlasP01833
HPRD01436
IPIIPI00004573   IPI01018257   
Protein Interaction databases
DIP (DOE-UCLA)P01833
IntAct (EBI)P01833
FunCoupENSG00000162896
BioGRIDPIGR
STRING (EMBL)PIGR
ZODIACPIGR
Ontologies - Pathways
QuickGOP01833
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  polymeric immunoglobulin receptor activity  retina homeostasis  immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor  extracellular space  plasma membrane  integral component of plasma membrane  epidermal growth factor receptor signaling pathway  Fc receptor signaling pathway  receptor clustering  receptor complex  extracellular exosome  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  polymeric immunoglobulin receptor activity  retina homeostasis  immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor  extracellular space  plasma membrane  integral component of plasma membrane  epidermal growth factor receptor signaling pathway  Fc receptor signaling pathway  receptor clustering  receptor complex  extracellular exosome  
Pathways : KEGGIntestinal immune network for IgA production   
NDEx NetworkPIGR
Atlas of Cancer Signalling NetworkPIGR
Wikipedia pathwaysPIGR
Orthology - Evolution
OrthoDB5284
GeneTree (enSembl)ENSG00000162896
Phylogenetic Trees/Animal Genes : TreeFamPIGR
HOVERGENP01833
HOGENOMP01833
Homologs : HomoloGenePIGR
Homology/Alignments : Family Browser (UCSC)PIGR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGR
dbVarPIGR
ClinVarPIGR
1000_GenomesPIGR 
Exome Variant ServerPIGR
ExAC (Exome Aggregation Consortium)PIGR (select the gene name)
Genetic variants : HAPMAP5284
Genomic Variants (DGV)PIGR [DGVbeta]
DECIPHER (Syndromes)1:207101867-207119811  ENSG00000162896
CONAN: Copy Number AnalysisPIGR 
Mutations
ICGC Data PortalPIGR 
TCGA Data PortalPIGR 
Broad Tumor PortalPIGR
OASIS PortalPIGR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGR
DgiDB (Drug Gene Interaction Database)PIGR
DoCM (Curated mutations)PIGR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGR (select a term)
intoGenPIGR
Cancer3DPIGR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM173880   
Orphanet
MedgenPIGR
Genetic Testing Registry PIGR
NextProtP01833 [Medical]
TSGene5284
GENETestsPIGR
Huge Navigator PIGR [HugePedia]
snp3D : Map Gene to Disease5284
BioCentury BCIQPIGR
ClinGenPIGR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5284
Chemical/Pharm GKB GenePA33300
Clinical trialPIGR
Miscellaneous
canSAR (ICR)PIGR (select the gene name)
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGR
EVEXPIGR
GoPubMedPIGR
iHOPPIGR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:21:23 CET 2017

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