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PIGS (phosphatidylinositol glycan anchor biosynthesis class S)

Identity

Alias_namesphosphatidylinositol glycan
Other alias-
HGNC (Hugo) PIGS
LocusID (NCBI) 94005
Atlas_Id 46786
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 26880406 and ends at 26898887 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PIGS (17q11.2) / PIGS (17q11.2)PIGS (17q11.2) / SPAG5 (17q11.2)PIGS 17q11.2 / SPAG5 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGS   14937
Cards
Entrez_Gene (NCBI)PIGS  94005  phosphatidylinositol glycan anchor biosynthesis class S
Aliases
GeneCards (Weizmann)PIGS
Ensembl hg19 (Hinxton)ENSG00000087111 [Gene_View]  chr17:26880406-26898887 [Contig_View]  PIGS [Vega]
Ensembl hg38 (Hinxton)ENSG00000087111 [Gene_View]  chr17:26880406-26898887 [Contig_View]  PIGS [Vega]
ICGC DataPortalENSG00000087111
TCGA cBioPortalPIGS
AceView (NCBI)PIGS
Genatlas (Paris)PIGS
WikiGenes94005
SOURCE (Princeton)PIGS
Genetics Home Reference (NIH)PIGS
Genomic and cartography
GoldenPath hg19 (UCSC)PIGS  -     chr17:26880406-26898887 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIGS  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblPIGS - 17q11.2 [CytoView hg19]  PIGS - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIPIGS [Mapview hg19]  PIGS [Mapview hg38]
OMIM610271   
Gene and transcription
Genbank (Entrez)AB057723 AF161427 AK025825 AK055512 AK075428
RefSeq transcript (Entrez)NM_033198
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)PIGS
Cluster EST : UnigeneHs.462550 [ NCBI ]
CGAP (NCI)Hs.462550
Alternative Splicing GalleryENSG00000087111
Gene ExpressionPIGS [ NCBI-GEO ]   PIGS [ EBI - ARRAY_EXPRESS ]   PIGS [ SEEK ]   PIGS [ MEM ]
Gene Expression Viewer (FireBrowse)PIGS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94005
GTEX Portal (Tissue expression)PIGS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S52
Splice isoforms : SwissVarQ96S52
PhosPhoSitePlusQ96S52
Domains : Interpro (EBI)PtdIno-glycan_biosynth_class_S   
Domain families : Pfam (Sanger)PIG-S (PF10510)   
Domain families : Pfam (NCBI)pfam10510   
Conserved Domain (NCBI)PIGS
DMDM Disease mutations94005
Blocks (Seattle)PIGS
SuperfamilyQ96S52
Human Protein AtlasENSG00000087111
Peptide AtlasQ96S52
HPRD15135
IPIIPI00465308   IPI00554703   IPI00966277   IPI00036441   
Protein Interaction databases
DIP (DOE-UCLA)Q96S52
IntAct (EBI)Q96S52
FunCoupENSG00000087111
BioGRIDPIGS
STRING (EMBL)PIGS
ZODIACPIGS
Ontologies - Pathways
QuickGOQ96S52
Ontology : AmiGOGPI-anchor transamidase activity  protein binding  endoplasmic reticulum membrane  membrane  attachment of GPI anchor to protein  GPI-anchor transamidase complex  
Ontology : EGO-EBIGPI-anchor transamidase activity  protein binding  endoplasmic reticulum membrane  membrane  attachment of GPI anchor to protein  GPI-anchor transamidase complex  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGS
Atlas of Cancer Signalling NetworkPIGS
Wikipedia pathwaysPIGS
Orthology - Evolution
OrthoDB94005
GeneTree (enSembl)ENSG00000087111
Phylogenetic Trees/Animal Genes : TreeFamPIGS
HOVERGENQ96S52
HOGENOMQ96S52
Homologs : HomoloGenePIGS
Homology/Alignments : Family Browser (UCSC)PIGS
Gene fusions - Rearrangements
Fusion : MitelmanPIGS/SPAG5 [17q11.2/17q11.2]  
Fusion: TCGAPIGS 17q11.2 SPAG5 17q11.2 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGS
dbVarPIGS
ClinVarPIGS
1000_GenomesPIGS 
Exome Variant ServerPIGS
ExAC (Exome Aggregation Consortium)PIGS (select the gene name)
Genetic variants : HAPMAP94005
Genomic Variants (DGV)PIGS [DGVbeta]
DECIPHER (Syndromes)17:26880406-26898887  ENSG00000087111
CONAN: Copy Number AnalysisPIGS 
Mutations
ICGC Data PortalPIGS 
TCGA Data PortalPIGS 
Broad Tumor PortalPIGS
OASIS PortalPIGS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGS
DgiDB (Drug Gene Interaction Database)PIGS
DoCM (Curated mutations)PIGS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGS (select a term)
intoGenPIGS
Cancer3DPIGS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610271   
Orphanet
MedgenPIGS
Genetic Testing Registry PIGS
NextProtQ96S52 [Medical]
TSGene94005
GENETestsPIGS
Huge Navigator PIGS [HugePedia]
snp3D : Map Gene to Disease94005
BioCentury BCIQPIGS
ClinGenPIGS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94005
Chemical/Pharm GKB GenePA33301
Clinical trialPIGS
Miscellaneous
canSAR (ICR)PIGS (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGS
EVEXPIGS
GoPubMedPIGS
iHOPPIGS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:21 CEST 2017

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