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PIGS (phosphatidylinositol glycan anchor biosynthesis class S)

Identity

Alias (NCBI)GPIBD18
HGNC (Hugo) PIGS
HGNC Alias nameGPI transamidase subunit
HGNC Previous namephosphatidylinositol glycan, class S
LocusID (NCBI) 94005
Atlas_Id 46786
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28553387 and ends at 28571524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGS (17q11.2) / PIGS (17q11.2)PIGS (17q11.2) / SPAG5 (17q11.2)PIGS 17q11.2 / SPAG5 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIGS   14937
Cards
Entrez_Gene (NCBI)PIGS    phosphatidylinositol glycan anchor biosynthesis class S
AliasesGPIBD18
GeneCards (Weizmann)PIGS
Ensembl hg19 (Hinxton)ENSG00000087111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087111 [Gene_View]  ENSG00000087111 [Sequence]  chr17:28553387-28571524 [Contig_View]  PIGS [Vega]
ICGC DataPortalENSG00000087111
TCGA cBioPortalPIGS
AceView (NCBI)PIGS
Genatlas (Paris)PIGS
SOURCE (Princeton)PIGS
Genetics Home Reference (NIH)PIGS
Genomic and cartography
GoldenPath hg38 (UCSC)PIGS  -     chr17:28553387-28571524 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGS  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPIGS - 17q11.2 [CytoView hg19]  PIGS - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000087111
Genome Data Viewer NCBIPIGS [Mapview hg19]  
OMIM610271   618143   
Gene and transcription
Genbank (Entrez)AB057723 AF161427 AK025825 AK055512 AK075428
RefSeq transcript (Entrez)NM_033198
Consensus coding sequences : CCDS (NCBI)PIGS
Gene ExpressionPIGS [ NCBI-GEO ]   PIGS [ EBI - ARRAY_EXPRESS ]   PIGS [ SEEK ]   PIGS [ MEM ]
Gene Expression Viewer (FireBrowse)PIGS [ Firebrowse - Broad ]
GenevisibleExpression of PIGS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94005
GTEX Portal (Tissue expression)PIGS
Human Protein AtlasENSG00000087111-PIGS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S52
PhosPhoSitePlusQ96S52
Domains : Interpro (EBI)PtdIno-glycan_biosynth_class_S   
Domain families : Pfam (Sanger)PIG-S (PF10510)   
Domain families : Pfam (NCBI)pfam10510   
Conserved Domain (NCBI)PIGS
SuperfamilyQ96S52
AlphaFold pdb e-kbQ96S52   
Human Protein Atlas [tissue]ENSG00000087111-PIGS [tissue]
HPRD15135
Protein Interaction databases
DIP (DOE-UCLA)Q96S52
IntAct (EBI)Q96S52
BioGRIDPIGS
STRING (EMBL)PIGS
ZODIACPIGS
Ontologies - Pathways
QuickGOQ96S52
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  membrane  attachment of GPI anchor to protein  GPI-anchor transamidase complex  GPI-anchor transamidase complex  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  membrane  attachment of GPI anchor to protein  GPI-anchor transamidase complex  GPI-anchor transamidase complex  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGS
Atlas of Cancer Signalling NetworkPIGS
Wikipedia pathwaysPIGS
Orthology - Evolution
OrthoDB94005
GeneTree (enSembl)ENSG00000087111
Phylogenetic Trees/Animal Genes : TreeFamPIGS
Homologs : HomoloGenePIGS
Homology/Alignments : Family Browser (UCSC)PIGS
Gene fusions - Rearrangements
Fusion : MitelmanPIGS/SPAG5 [17q11.2/17q11.2]  
Fusion : QuiverPIGS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGS
dbVarPIGS
ClinVarPIGS
MonarchPIGS
1000_GenomesPIGS 
Exome Variant ServerPIGS
GNOMAD BrowserENSG00000087111
Varsome BrowserPIGS
ACMGPIGS variants
VarityQ96S52
Genomic Variants (DGV)PIGS [DGVbeta]
DECIPHERPIGS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGS 
Mutations
ICGC Data PortalPIGS 
TCGA Data PortalPIGS 
Broad Tumor PortalPIGS
OASIS PortalPIGS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPIGS
Mutations and Diseases : HGMDPIGS
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIGS
DgiDB (Drug Gene Interaction Database)PIGS
DoCM (Curated mutations)PIGS
CIViC (Clinical Interpretations of Variants in Cancer)PIGS
Cancer3DPIGS
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610271    618143   
Orphanet
DisGeNETPIGS
MedgenPIGS
Genetic Testing Registry PIGS
NextProtQ96S52 [Medical]
GENETestsPIGS
Target ValidationPIGS
Huge Navigator PIGS [HugePedia]
ClinGenPIGS
Clinical trials, drugs, therapy
MyCancerGenomePIGS
Protein Interactions : CTDPIGS
Pharm GKB GenePA33301
PharosQ96S52
Clinical trialPIGS
Miscellaneous
canSAR (ICR)PIGS
HarmonizomePIGS
DataMed IndexPIGS
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIGS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:25:18 CEST 2021

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