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PIGT (phosphatidylinositol glycan anchor biosynthesis class T)

Identity

Alias_namesphosphatidylinositol glycan
Other aliasCGI-06
MCAHS3
NDAP
PNH2
HGNC (Hugo) PIGT
LocusID (NCBI) 51604
Atlas_Id 47494
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44044707 and ends at 44054885 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BLCAP (20q11.23) / PIGT (20q13.12)DENND5B (12p11.21) / PIGT (20q13.12)HUWE1 (Xp11.22) / PIGT (20q13.12)
PIGT (20q13.12) / CTNNA2 (2p12)PIGT (20q13.12) / CUX2 (12q24.11)PIGT (20q13.12) / PIGT (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGT   14938
Cards
Entrez_Gene (NCBI)PIGT  51604  phosphatidylinositol glycan anchor biosynthesis class T
AliasesCGI-06; MCAHS3; NDAP; PNH2
GeneCards (Weizmann)PIGT
Ensembl hg19 (Hinxton)ENSG00000124155 [Gene_View]  chr20:44044707-44054885 [Contig_View]  PIGT [Vega]
Ensembl hg38 (Hinxton)ENSG00000124155 [Gene_View]  chr20:44044707-44054885 [Contig_View]  PIGT [Vega]
ICGC DataPortalENSG00000124155
TCGA cBioPortalPIGT
AceView (NCBI)PIGT
Genatlas (Paris)PIGT
WikiGenes51604
SOURCE (Princeton)PIGT
Genetics Home Reference (NIH)PIGT
Genomic and cartography
GoldenPath hg19 (UCSC)PIGT  -     chr20:44044707-44054885 +  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIGT  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblPIGT - 20q13.12 [CytoView hg19]  PIGT - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIPIGT [Mapview hg19]  PIGT [Mapview hg38]
OMIM610272   615398   615399   
Gene and transcription
Genbank (Entrez)AB057724 AF058295 AF132940 AF305815 AK075469
RefSeq transcript (Entrez)NM_001184728 NM_001184729 NM_001184730 NM_015937
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)PIGT
Cluster EST : UnigeneHs.437388 [ NCBI ]
CGAP (NCI)Hs.437388
Alternative Splicing GalleryENSG00000124155
Gene ExpressionPIGT [ NCBI-GEO ]   PIGT [ EBI - ARRAY_EXPRESS ]   PIGT [ SEEK ]   PIGT [ MEM ]
Gene Expression Viewer (FireBrowse)PIGT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51604
GTEX Portal (Tissue expression)PIGT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969N2
Splice isoforms : SwissVarQ969N2
PhosPhoSitePlusQ969N2
Domains : Interpro (EBI)PIG-T   
Domain families : Pfam (Sanger)Gpi16 (PF04113)   
Domain families : Pfam (NCBI)pfam04113   
Conserved Domain (NCBI)PIGT
DMDM Disease mutations51604
Blocks (Seattle)PIGT
SuperfamilyQ969N2
Human Protein AtlasENSG00000124155
Peptide AtlasQ969N2
HPRD15136
IPIIPI00100030   IPI00401041   IPI00385011   IPI00401043   IPI01011799   IPI00942773   IPI00922677   IPI00064298   IPI00922696   
Protein Interaction databases
DIP (DOE-UCLA)Q969N2
IntAct (EBI)Q969N2
FunCoupENSG00000124155
BioGRIDPIGT
STRING (EMBL)PIGT
ZODIACPIGT
Ontologies - Pathways
QuickGOQ969N2
Ontology : AmiGOGPI-anchor transamidase activity  protein binding  endoplasmic reticulum membrane  membrane  cytoplasmic, membrane-bounded vesicle  attachment of GPI anchor to protein  integral component of endoplasmic reticulum membrane  neuron differentiation  GPI-anchor transamidase complex  neuron apoptotic process  
Ontology : EGO-EBIGPI-anchor transamidase activity  protein binding  endoplasmic reticulum membrane  membrane  cytoplasmic, membrane-bounded vesicle  attachment of GPI anchor to protein  integral component of endoplasmic reticulum membrane  neuron differentiation  GPI-anchor transamidase complex  neuron apoptotic process  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGT
Atlas of Cancer Signalling NetworkPIGT
Wikipedia pathwaysPIGT
Orthology - Evolution
OrthoDB51604
GeneTree (enSembl)ENSG00000124155
Phylogenetic Trees/Animal Genes : TreeFamPIGT
HOVERGENQ969N2
HOGENOMQ969N2
Homologs : HomoloGenePIGT
Homology/Alignments : Family Browser (UCSC)PIGT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGT
dbVarPIGT
ClinVarPIGT
1000_GenomesPIGT 
Exome Variant ServerPIGT
ExAC (Exome Aggregation Consortium)PIGT (select the gene name)
Genetic variants : HAPMAP51604
Genomic Variants (DGV)PIGT [DGVbeta]
DECIPHER (Syndromes)20:44044707-44054885  ENSG00000124155
CONAN: Copy Number AnalysisPIGT 
Mutations
ICGC Data PortalPIGT 
TCGA Data PortalPIGT 
Broad Tumor PortalPIGT
OASIS PortalPIGT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGT
DgiDB (Drug Gene Interaction Database)PIGT
DoCM (Curated mutations)PIGT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGT (select a term)
intoGenPIGT
Cancer3DPIGT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610272    615398    615399   
Orphanet22433   
MedgenPIGT
Genetic Testing Registry PIGT
NextProtQ969N2 [Medical]
TSGene51604
GENETestsPIGT
Huge Navigator PIGT [HugePedia]
snp3D : Map Gene to Disease51604
BioCentury BCIQPIGT
ClinGenPIGT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51604
Chemical/Pharm GKB GenePA33302
Clinical trialPIGT
Miscellaneous
canSAR (ICR)PIGT (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGT
EVEXPIGT
GoPubMedPIGT
iHOPPIGT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:21:23 CET 2017

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