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PIGV (phosphatidylinositol glycan anchor biosynthesis class V)

Identity

Alias (NCBI)GPI-MT-II
HPMRS1
PIG-V
HGNC (Hugo) PIGV
HGNC Alias symbFLJ20477
HGNC Alias nameGPI mannosyltransferase 2
 dol-P-Man dependent GPI mannosyltransferase
HGNC Previous namephosphatidylinositol glycan, class V
LocusID (NCBI) 55650
Atlas_Id 71909
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26787950 and ends at 26800659 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPB41 (1p35.3)::PIGV (1p36.11)PIGV (1p36.11)::ZDHHC18 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIGV   26031
Cards
Entrez_Gene (NCBI)PIGV    phosphatidylinositol glycan anchor biosynthesis class V
AliasesGPI-MT-II; HPMRS1; PIG-V
GeneCards (Weizmann)PIGV
Ensembl hg19 (Hinxton)ENSG00000060642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000060642 [Gene_View]  ENSG00000060642 [Sequence]  chr1:26787950-26800659 [Contig_View]  PIGV [Vega]
ICGC DataPortalENSG00000060642
TCGA cBioPortalPIGV
AceView (NCBI)PIGV
Genatlas (Paris)PIGV
SOURCE (Princeton)PIGV
Genetics Home Reference (NIH)PIGV
Genomic and cartography
GoldenPath hg38 (UCSC)PIGV  -     chr1:26787950-26800659 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGV  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathPIGV - 1p36.11 [CytoView hg19]  PIGV - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000060642
Genome Data Viewer NCBIPIGV [Mapview hg19]  
OMIM239300   610274   
Gene and transcription
Genbank (Entrez)AK000484 AK056539 AK097053 AK225521 AK301626
RefSeq transcript (Entrez)NM_001202554 NM_001374478 NM_001374480 NM_001374481 NM_001374482 NM_001374483 NM_001374484 NM_001374485 NM_001374486 NM_017837
Consensus coding sequences : CCDS (NCBI)PIGV
Gene ExpressionPIGV [ NCBI-GEO ]   PIGV [ EBI - ARRAY_EXPRESS ]   PIGV [ SEEK ]   PIGV [ MEM ]
Gene Expression Viewer (FireBrowse)PIGV [ Firebrowse - Broad ]
GenevisibleExpression of PIGV in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55650
GTEX Portal (Tissue expression)PIGV
Human Protein AtlasENSG00000060642-PIGV [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUD9
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9NUD9
Domains : Interpro (EBI)PIG-V/Gpi18   
Domain families : Pfam (Sanger)Mannosyl_trans2 (PF04188)   
Domain families : Pfam (NCBI)pfam04188   
Conserved Domain (NCBI)PIGV
SuperfamilyQ9NUD9
AlphaFold pdb e-kbQ9NUD9   
Human Protein Atlas [tissue]ENSG00000060642-PIGV [tissue]
HPRD07912
Protein Interaction databases
DIP (DOE-UCLA)Q9NUD9
IntAct (EBI)Q9NUD9
BioGRIDPIGV
STRING (EMBL)PIGV
ZODIACPIGV
Ontologies - Pathways
QuickGOQ9NUD9
Ontology : AmiGOalpha-1,6-mannosyltransferase activity  mannosyltransferase activity  mannosyltransferase activity  mannosyltransferase activity  glycolipid mannosyltransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannosyltransferase complex  mannosylation  
Ontology : EGO-EBIalpha-1,6-mannosyltransferase activity  mannosyltransferase activity  mannosyltransferase activity  mannosyltransferase activity  glycolipid mannosyltransferase activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannosyltransferase complex  mannosylation  
Pathways : KEGGKEGG_hsa01031 Glycan structures - biosynthesis 2    KEGG_hsa00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGV
Atlas of Cancer Signalling NetworkPIGV
Wikipedia pathwaysPIGV
Orthology - Evolution
OrthoDB55650
GeneTree (enSembl)ENSG00000060642
Phylogenetic Trees/Animal Genes : TreeFamPIGV
Homologs : HomoloGenePIGV
Homology/Alignments : Family Browser (UCSC)PIGV
Gene fusions - Rearrangements
Fusion : QuiverPIGV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGV
dbVarPIGV
ClinVarPIGV
MonarchPIGV
1000_GenomesPIGV 
Exome Variant ServerPIGV
GNOMAD BrowserENSG00000060642
Varsome BrowserPIGV
ACMGPIGV variants
VarityQ9NUD9
Genomic Variants (DGV)PIGV [DGVbeta]
DECIPHERPIGV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGV 
Mutations
ICGC Data PortalPIGV 
TCGA Data PortalPIGV 
Broad Tumor PortalPIGV
OASIS PortalPIGV [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGV  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPIGV
Mutations and Diseases : HGMDPIGV
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIGV
DgiDB (Drug Gene Interaction Database)PIGV
DoCM (Curated mutations)PIGV
CIViC (Clinical Interpretations of Variants in Cancer)PIGV
Cancer3DPIGV
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM239300    610274   
Orphanet19518   
DisGeNETPIGV
MedgenPIGV
Genetic Testing Registry PIGV
NextProtQ9NUD9 [Medical]
GENETestsPIGV
Target ValidationPIGV
Huge Navigator PIGV [HugePedia]
ClinGenPIGV
Clinical trials, drugs, therapy
MyCancerGenomePIGV
Protein Interactions : CTDPIGV
Pharm GKB GenePA134952230
PharosQ9NUD9
Clinical trialPIGV
Miscellaneous
canSAR (ICR)PIGV
HarmonizomePIGV
ARCHS4PIGV
DataMed IndexPIGV
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIGV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 13:46:00 CET 2022

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