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PIGV (phosphatidylinositol glycan anchor biosynthesis class V)

Identity

Alias_namesphosphatidylinositol glycan, class V
Alias_symbol (synonym)FLJ20477
Other aliasGPI-MT-II
HPMRS1
PIG-V
HGNC (Hugo) PIGV
LocusID (NCBI) 55650
Atlas_Id 71909
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26788188 and ends at 26798403 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EPB41 (1p35.3) / PIGV (1p36.11)PIGV (1p36.11) / ZDHHC18 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGV   26031
Cards
Entrez_Gene (NCBI)PIGV  55650  phosphatidylinositol glycan anchor biosynthesis class V
AliasesGPI-MT-II; HPMRS1; PIG-V
GeneCards (Weizmann)PIGV
Ensembl hg19 (Hinxton)ENSG00000060642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000060642 [Gene_View]  chr1:26788188-26798403 [Contig_View]  PIGV [Vega]
ICGC DataPortalENSG00000060642
TCGA cBioPortalPIGV
AceView (NCBI)PIGV
Genatlas (Paris)PIGV
WikiGenes55650
SOURCE (Princeton)PIGV
Genetics Home Reference (NIH)PIGV
Genomic and cartography
GoldenPath hg38 (UCSC)PIGV  -     chr1:26788188-26798403 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGV  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblPIGV - 1p36.11 [CytoView hg19]  PIGV - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIPIGV [Mapview hg19]  PIGV [Mapview hg38]
OMIM239300   610274   
Gene and transcription
Genbank (Entrez)AK000484 AK056539 AK097053 AK225521 AK301626
RefSeq transcript (Entrez)NM_001202554 NM_017837
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGV
Cluster EST : UnigeneHs.732254 [ NCBI ]
CGAP (NCI)Hs.732254
Alternative Splicing GalleryENSG00000060642
Gene ExpressionPIGV [ NCBI-GEO ]   PIGV [ EBI - ARRAY_EXPRESS ]   PIGV [ SEEK ]   PIGV [ MEM ]
Gene Expression Viewer (FireBrowse)PIGV [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55650
GTEX Portal (Tissue expression)PIGV
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUD9
Splice isoforms : SwissVarQ9NUD9
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9NUD9
Domains : Interpro (EBI)PIG-V/Gpi18   
Domain families : Pfam (Sanger)Mannosyl_trans2 (PF04188)   
Domain families : Pfam (NCBI)pfam04188   
Conserved Domain (NCBI)PIGV
DMDM Disease mutations55650
Blocks (Seattle)PIGV
SuperfamilyQ9NUD9
Human Protein AtlasENSG00000060642
Peptide AtlasQ9NUD9
HPRD07912
IPIIPI00100298   IPI00908335   IPI00647569   IPI00646854   IPI00646371   IPI00978150   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUD9
IntAct (EBI)Q9NUD9
FunCoupENSG00000060642
BioGRIDPIGV
STRING (EMBL)PIGV
ZODIACPIGV
Ontologies - Pathways
QuickGOQ9NUD9
Ontology : AmiGOmannosyltransferase activity  mannosyltransferase activity  glycolipid mannosyltransferase activity  dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannosyltransferase complex  mannosylation  
Ontology : EGO-EBImannosyltransferase activity  mannosyltransferase activity  glycolipid mannosyltransferase activity  dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  mannosyltransferase complex  mannosylation  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGV
Atlas of Cancer Signalling NetworkPIGV
Wikipedia pathwaysPIGV
Orthology - Evolution
OrthoDB55650
GeneTree (enSembl)ENSG00000060642
Phylogenetic Trees/Animal Genes : TreeFamPIGV
HOVERGENQ9NUD9
HOGENOMQ9NUD9
Homologs : HomoloGenePIGV
Homology/Alignments : Family Browser (UCSC)PIGV
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGV [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGV
dbVarPIGV
ClinVarPIGV
1000_GenomesPIGV 
Exome Variant ServerPIGV
ExAC (Exome Aggregation Consortium)PIGV (select the gene name)
Genetic variants : HAPMAP55650
Genomic Variants (DGV)PIGV [DGVbeta]
DECIPHERPIGV [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGV 
Mutations
ICGC Data PortalPIGV 
TCGA Data PortalPIGV 
Broad Tumor PortalPIGV
OASIS PortalPIGV [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGV  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGV
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PIGV
DgiDB (Drug Gene Interaction Database)PIGV
DoCM (Curated mutations)PIGV (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGV (select a term)
intoGenPIGV
Cancer3DPIGV(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM239300    610274   
Orphanet19518   
MedgenPIGV
Genetic Testing Registry PIGV
NextProtQ9NUD9 [Medical]
TSGene55650
GENETestsPIGV
Target ValidationPIGV
Huge Navigator PIGV [HugePedia]
snp3D : Map Gene to Disease55650
BioCentury BCIQPIGV
ClinGenPIGV
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55650
Chemical/Pharm GKB GenePA134952230
Clinical trialPIGV
Miscellaneous
canSAR (ICR)PIGV (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGV
EVEXPIGV
GoPubMedPIGV
iHOPPIGV
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:20 CEST 2017

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