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PIGW (phosphatidylinositol glycan anchor biosynthesis class W)

Identity

Alias_namesphosphatidylinositol glycan
Alias_symbol (synonym)Gwt1
FLJ37433
Other aliasHPMRS5
HGNC (Hugo) PIGW
LocusID (NCBI) 284098
Atlas_Id 46659
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36534762 and ends at 36539303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CPD (17q11.2) / PIGW (17q12)PIGW (17q12) / POMGNT1 (1p34.1)CPD 17q11.2 / PIGW 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGW   23213
Cards
Entrez_Gene (NCBI)PIGW  284098  phosphatidylinositol glycan anchor biosynthesis class W
AliasesGwt1; HPMRS5
GeneCards (Weizmann)PIGW
Ensembl hg19 (Hinxton)ENSG00000277161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277161 [Gene_View]  chr17:36534762-36539303 [Contig_View]  PIGW [Vega]
ICGC DataPortalENSG00000277161
TCGA cBioPortalPIGW
AceView (NCBI)PIGW
Genatlas (Paris)PIGW
WikiGenes284098
SOURCE (Princeton)PIGW
Genetics Home Reference (NIH)PIGW
Genomic and cartography
GoldenPath hg38 (UCSC)PIGW  -     chr17:36534762-36539303 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGW  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblPIGW - 17q12 [CytoView hg19]  PIGW - 17q12 [CytoView hg38]
Mapping of homologs : NCBIPIGW [Mapview hg19]  PIGW [Mapview hg38]
OMIM610275   616025   
Gene and transcription
Genbank (Entrez)AB097818 AK094752 BC054025 BC144220 BC156433
RefSeq transcript (Entrez)NM_001346754 NM_001346755 NM_178517
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_052004 NT_187614
Consensus coding sequences : CCDS (NCBI)PIGW
Cluster EST : UnigeneHs.378885 [ NCBI ]
CGAP (NCI)Hs.378885
Alternative Splicing GalleryENSG00000277161
Gene ExpressionPIGW [ NCBI-GEO ]   PIGW [ EBI - ARRAY_EXPRESS ]   PIGW [ SEEK ]   PIGW [ MEM ]
Gene Expression Viewer (FireBrowse)PIGW [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284098
GTEX Portal (Tissue expression)PIGW
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7B1
Splice isoforms : SwissVarQ7Z7B1
PhosPhoSitePlusQ7Z7B1
Domains : Interpro (EBI)GWT1   
Domain families : Pfam (Sanger)GWT1 (PF06423)   
Domain families : Pfam (NCBI)pfam06423   
Conserved Domain (NCBI)PIGW
DMDM Disease mutations284098
Blocks (Seattle)PIGW
SuperfamilyQ7Z7B1
Human Protein AtlasENSG00000277161
Peptide AtlasQ7Z7B1
HPRD11432
IPIIPI00167713   IPI00791422   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7B1
IntAct (EBI)Q7Z7B1
FunCoupENSG00000277161
BioGRIDPIGW
STRING (EMBL)PIGW
ZODIACPIGW
Ontologies - Pathways
QuickGOQ7Z7B1
Ontology : AmiGOendoplasmic reticulum membrane  GPI anchor metabolic process  O-acyltransferase activity  integral component of membrane  preassembly of GPI anchor in ER membrane  protein localization to plasma membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  GPI anchor metabolic process  O-acyltransferase activity  integral component of membrane  preassembly of GPI anchor in ER membrane  protein localization to plasma membrane  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGW
Atlas of Cancer Signalling NetworkPIGW
Wikipedia pathwaysPIGW
Orthology - Evolution
OrthoDB284098
GeneTree (enSembl)ENSG00000277161
Phylogenetic Trees/Animal Genes : TreeFamPIGW
HOVERGENQ7Z7B1
HOGENOMQ7Z7B1
Homologs : HomoloGenePIGW
Homology/Alignments : Family Browser (UCSC)PIGW
Gene fusions - Rearrangements
Fusion : MitelmanCPD/PIGW [17q11.2/17q12]  [t(17;17)(q11;q12)]  
Fusion: TCGACPD 17q11.2 PIGW 17q12 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGW
dbVarPIGW
ClinVarPIGW
1000_GenomesPIGW 
Exome Variant ServerPIGW
ExAC (Exome Aggregation Consortium)PIGW (select the gene name)
Genetic variants : HAPMAP284098
Genomic Variants (DGV)PIGW [DGVbeta]
DECIPHERPIGW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGW 
Mutations
ICGC Data PortalPIGW 
TCGA Data PortalPIGW 
Broad Tumor PortalPIGW
OASIS PortalPIGW [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIGW
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGW
DgiDB (Drug Gene Interaction Database)PIGW
DoCM (Curated mutations)PIGW (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGW (select a term)
intoGenPIGW
Cancer3DPIGW(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610275    616025   
Orphanet19518   
MedgenPIGW
Genetic Testing Registry PIGW
NextProtQ7Z7B1 [Medical]
TSGene284098
GENETestsPIGW
Target ValidationPIGW
Huge Navigator PIGW [HugePedia]
snp3D : Map Gene to Disease284098
BioCentury BCIQPIGW
ClinGenPIGW
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284098
Chemical/Pharm GKB GenePA134894412
Clinical trialPIGW
Miscellaneous
canSAR (ICR)PIGW (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGW
EVEXPIGW
GoPubMedPIGW
iHOPPIGW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:24:48 CEST 2017

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