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PIGW (phosphatidylinositol glycan anchor biosynthesis class W)

Identity

Alias (NCBI)Gwt1
HPMRS5
HGNC (Hugo) PIGW
HGNC Alias symbGwt1
FLJ37433
HGNC Previous namephosphatidylinositol glycan, class W
LocusID (NCBI) 284098
Atlas_Id 46659
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36534762 and ends at 36539303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CPD (17q11.2) / PIGW (17q12)PIGW (17q12) / POMGNT1 (1p34.1)CPD 17q11.2 / PIGW 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIGW   23213
Cards
Entrez_Gene (NCBI)PIGW    phosphatidylinositol glycan anchor biosynthesis class W
AliasesGwt1; HPMRS5
GeneCards (Weizmann)PIGW
Ensembl hg19 (Hinxton)ENSG00000277161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277161 [Gene_View]  ENSG00000277161 [Sequence]  chr17:36534762-36539303 [Contig_View]  PIGW [Vega]
ICGC DataPortalENSG00000277161
TCGA cBioPortalPIGW
AceView (NCBI)PIGW
Genatlas (Paris)PIGW
SOURCE (Princeton)PIGW
Genetics Home Reference (NIH)PIGW
Genomic and cartography
GoldenPath hg38 (UCSC)PIGW  -     chr17:36534762-36539303 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGW  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathPIGW - 17q12 [CytoView hg19]  PIGW - 17q12 [CytoView hg38]
ImmunoBaseENSG00000277161
Genome Data Viewer NCBIPIGW [Mapview hg19]  
OMIM610275   616025   
Gene and transcription
Genbank (Entrez)AB097818 AK094752 BC054025 BC144220 DN998947
RefSeq transcript (Entrez)NM_001346754 NM_001346755 NM_178517
Consensus coding sequences : CCDS (NCBI)PIGW
Gene ExpressionPIGW [ NCBI-GEO ]   PIGW [ EBI - ARRAY_EXPRESS ]   PIGW [ SEEK ]   PIGW [ MEM ]
Gene Expression Viewer (FireBrowse)PIGW [ Firebrowse - Broad ]
GenevisibleExpression of PIGW in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284098
GTEX Portal (Tissue expression)PIGW
Human Protein AtlasENSG00000277161-PIGW [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7B1
PhosPhoSitePlusQ7Z7B1
Domains : Interpro (EBI)PIGW/GWT1   
Domain families : Pfam (Sanger)GWT1 (PF06423)   
Domain families : Pfam (NCBI)pfam06423   
Conserved Domain (NCBI)PIGW
SuperfamilyQ7Z7B1
AlphaFold pdb e-kbQ7Z7B1   
Human Protein Atlas [tissue]ENSG00000277161-PIGW [tissue]
HPRD11432
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7B1
IntAct (EBI)Q7Z7B1
BioGRIDPIGW
STRING (EMBL)PIGW
ZODIACPIGW
Ontologies - Pathways
QuickGOQ7Z7B1
Ontology : AmiGOendoplasmic reticulum membrane  GPI anchor metabolic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  glucosaminyl-phosphatidylinositol O-acyltransferase activity  protein localization to plasma membrane  protein localization to plasma membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  GPI anchor metabolic process  GPI anchor biosynthetic process  integral component of membrane  preassembly of GPI anchor in ER membrane  glucosaminyl-phosphatidylinositol O-acyltransferase activity  protein localization to plasma membrane  protein localization to plasma membrane  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGW
Atlas of Cancer Signalling NetworkPIGW
Wikipedia pathwaysPIGW
Orthology - Evolution
OrthoDB284098
GeneTree (enSembl)ENSG00000277161
Phylogenetic Trees/Animal Genes : TreeFamPIGW
Homologs : HomoloGenePIGW
Homology/Alignments : Family Browser (UCSC)PIGW
Gene fusions - Rearrangements
Fusion : MitelmanCPD/PIGW [17q11.2/17q12]  
Fusion : QuiverPIGW
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGW
dbVarPIGW
ClinVarPIGW
MonarchPIGW
1000_GenomesPIGW 
Exome Variant ServerPIGW
GNOMAD BrowserENSG00000277161
Varsome BrowserPIGW
ACMGPIGW variants
VarityQ7Z7B1
Genomic Variants (DGV)PIGW [DGVbeta]
DECIPHERPIGW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGW 
Mutations
ICGC Data PortalPIGW 
TCGA Data PortalPIGW 
Broad Tumor PortalPIGW
OASIS PortalPIGW [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIGW
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIGW
DgiDB (Drug Gene Interaction Database)PIGW
DoCM (Curated mutations)PIGW
CIViC (Clinical Interpretations of Variants in Cancer)PIGW
Cancer3DPIGW
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610275    616025   
Orphanet19518   
DisGeNETPIGW
MedgenPIGW
Genetic Testing Registry PIGW
NextProtQ7Z7B1 [Medical]
GENETestsPIGW
Target ValidationPIGW
Huge Navigator PIGW [HugePedia]
ClinGenPIGW
Clinical trials, drugs, therapy
MyCancerGenomePIGW
Protein Interactions : CTDPIGW
Pharm GKB GenePA134894412
PharosQ7Z7B1
Clinical trialPIGW
Miscellaneous
canSAR (ICR)PIGW
HarmonizomePIGW
DataMed IndexPIGW
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIGW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:25:19 CEST 2021

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