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PIGX (phosphatidylinositol glycan anchor biosynthesis class X)

Identity

Alias_namesphosphatidylinositol glycan, class X
Alias_symbol (synonym)FLJ20522
Other aliasPIG-X
HGNC (Hugo) PIGX
LocusID (NCBI) 54965
Atlas_Id 71910
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196712374 and ends at 196736005 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGX   26046
Cards
Entrez_Gene (NCBI)PIGX  54965  phosphatidylinositol glycan anchor biosynthesis class X
AliasesPIG-X
GeneCards (Weizmann)PIGX
Ensembl hg19 (Hinxton)ENSG00000163964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163964 [Gene_View]  chr3:196712374-196736005 [Contig_View]  PIGX [Vega]
ICGC DataPortalENSG00000163964
TCGA cBioPortalPIGX
AceView (NCBI)PIGX
Genatlas (Paris)PIGX
WikiGenes54965
SOURCE (Princeton)PIGX
Genetics Home Reference (NIH)PIGX
Genomic and cartography
GoldenPath hg38 (UCSC)PIGX  -     chr3:196712374-196736005 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGX  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblPIGX - 3q29 [CytoView hg19]  PIGX - 3q29 [CytoView hg38]
Mapping of homologs : NCBIPIGX [Mapview hg19]  PIGX [Mapview hg38]
OMIM610276   
Gene and transcription
Genbank (Entrez)AA879458 AK000529 AK294340 BC022542 BG715890
RefSeq transcript (Entrez)NM_001166304 NM_017861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGX
Cluster EST : UnigeneHs.223296 [ NCBI ]
CGAP (NCI)Hs.223296
Alternative Splicing GalleryENSG00000163964
Gene ExpressionPIGX [ NCBI-GEO ]   PIGX [ EBI - ARRAY_EXPRESS ]   PIGX [ SEEK ]   PIGX [ MEM ]
Gene Expression Viewer (FireBrowse)PIGX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54965
GTEX Portal (Tissue expression)PIGX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBF5
Splice isoforms : SwissVarQ8TBF5
PhosPhoSitePlusQ8TBF5
Domains : Interpro (EBI)PIG-X/PBN1   
Domain families : Pfam (Sanger)PIG-X (PF08320)   
Domain families : Pfam (NCBI)pfam08320   
Domain families : Smart (EMBL)PIG-X (SM00780)  
Conserved Domain (NCBI)PIGX
DMDM Disease mutations54965
Blocks (Seattle)PIGX
SuperfamilyQ8TBF5
Human Protein AtlasENSG00000163964
Peptide AtlasQ8TBF5
HPRD07921
IPIIPI00333873   IPI00047006   IPI00927627   IPI00927880   IPI00924542   IPI00876928   IPI00925062   IPI00925278   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBF5
IntAct (EBI)Q8TBF5
FunCoupENSG00000163964
BioGRIDPIGX
STRING (EMBL)PIGX
ZODIACPIGX
Ontologies - Pathways
QuickGOQ8TBF5
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  preassembly of GPI anchor in ER membrane  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGX
Atlas of Cancer Signalling NetworkPIGX
Wikipedia pathwaysPIGX
Orthology - Evolution
OrthoDB54965
GeneTree (enSembl)ENSG00000163964
Phylogenetic Trees/Animal Genes : TreeFamPIGX
HOVERGENQ8TBF5
HOGENOMQ8TBF5
Homologs : HomoloGenePIGX
Homology/Alignments : Family Browser (UCSC)PIGX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGX
dbVarPIGX
ClinVarPIGX
1000_GenomesPIGX 
Exome Variant ServerPIGX
ExAC (Exome Aggregation Consortium)PIGX (select the gene name)
Genetic variants : HAPMAP54965
Genomic Variants (DGV)PIGX [DGVbeta]
DECIPHERPIGX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGX 
Mutations
ICGC Data PortalPIGX 
TCGA Data PortalPIGX 
Broad Tumor PortalPIGX
OASIS PortalPIGX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGX
DgiDB (Drug Gene Interaction Database)PIGX
DoCM (Curated mutations)PIGX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGX (select a term)
intoGenPIGX
Cancer3DPIGX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610276   
Orphanet
MedgenPIGX
Genetic Testing Registry PIGX
NextProtQ8TBF5 [Medical]
TSGene54965
GENETestsPIGX
Target ValidationPIGX
Huge Navigator PIGX [HugePedia]
snp3D : Map Gene to Disease54965
BioCentury BCIQPIGX
ClinGenPIGX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54965
Chemical/Pharm GKB GenePA134928970
Clinical trialPIGX
Miscellaneous
canSAR (ICR)PIGX (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGX
EVEXPIGX
GoPubMedPIGX
iHOPPIGX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:36:20 CEST 2017

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