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PIGZ (phosphatidylinositol glycan anchor biosynthesis class Z)

Identity

Alias_namesphosphatidylinositol glycan, class Z
Alias_symbol (synonym)FLJ12768
MGC52163
SMP3
Other aliasGPI-MT-IV
PIG-Z
HGNC (Hugo) PIGZ
LocusID (NCBI) 80235
Atlas_Id 71912
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196946343 and ends at 196968871 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGZ (3q29) / EPHB3 (3q27.1)SENP5 (3q29) / PIGZ (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIGZ   30596
Cards
Entrez_Gene (NCBI)PIGZ  80235  phosphatidylinositol glycan anchor biosynthesis class Z
AliasesGPI-MT-IV; PIG-Z; SMP3
GeneCards (Weizmann)PIGZ
Ensembl hg19 (Hinxton)ENSG00000119227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119227 [Gene_View]  chr3:196946343-196968871 [Contig_View]  PIGZ [Vega]
ICGC DataPortalENSG00000119227
TCGA cBioPortalPIGZ
AceView (NCBI)PIGZ
Genatlas (Paris)PIGZ
WikiGenes80235
SOURCE (Princeton)PIGZ
Genetics Home Reference (NIH)PIGZ
Genomic and cartography
GoldenPath hg38 (UCSC)PIGZ  -     chr3:196946343-196968871 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIGZ  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblPIGZ - 3q29 [CytoView hg19]  PIGZ - 3q29 [CytoView hg38]
Mapping of homologs : NCBIPIGZ [Mapview hg19]  PIGZ [Mapview hg38]
OMIM611671   
Gene and transcription
Genbank (Entrez)AK022830 AK296867 BC018804 BC044640 BG760692
RefSeq transcript (Entrez)NM_025163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIGZ
Cluster EST : UnigeneHs.518403 [ NCBI ]
CGAP (NCI)Hs.518403
Alternative Splicing GalleryENSG00000119227
Gene ExpressionPIGZ [ NCBI-GEO ]   PIGZ [ EBI - ARRAY_EXPRESS ]   PIGZ [ SEEK ]   PIGZ [ MEM ]
Gene Expression Viewer (FireBrowse)PIGZ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80235
GTEX Portal (Tissue expression)PIGZ
Human Protein AtlasENSG00000119227-PIGZ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VD9
Splice isoforms : SwissVarQ86VD9
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ86VD9
Domains : Interpro (EBI)GPI_mannosylTrfase   
Domain families : Pfam (Sanger)Glyco_transf_22 (PF03901)   
Domain families : Pfam (NCBI)pfam03901   
Conserved Domain (NCBI)PIGZ
DMDM Disease mutations80235
Blocks (Seattle)PIGZ
SuperfamilyQ86VD9
Human Protein Atlas [tissue]ENSG00000119227-PIGZ [tissue]
Peptide AtlasQ86VD9
HPRD18076
IPIIPI00470544   IPI00925139   IPI00925311   
Protein Interaction databases
DIP (DOE-UCLA)Q86VD9
IntAct (EBI)Q86VD9
FunCoupENSG00000119227
BioGRIDPIGZ
STRING (EMBL)PIGZ
ZODIACPIGZ
Ontologies - Pathways
QuickGOQ86VD9
Ontology : AmiGOalpha-1,2-mannosyltransferase activity  mannosyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  mannosylation  
Ontology : EGO-EBIalpha-1,2-mannosyltransferase activity  mannosyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  GPI anchor biosynthetic process  GPI anchor biosynthetic process  GPI anchor biosynthetic process  integral component of membrane  mannosylation  
Pathways : KEGGGlycosylphosphatidylinositol(GPI)-anchor biosynthesis   
NDEx NetworkPIGZ
Atlas of Cancer Signalling NetworkPIGZ
Wikipedia pathwaysPIGZ
Orthology - Evolution
OrthoDB80235
GeneTree (enSembl)ENSG00000119227
Phylogenetic Trees/Animal Genes : TreeFamPIGZ
HOVERGENQ86VD9
HOGENOMQ86VD9
Homologs : HomoloGenePIGZ
Homology/Alignments : Family Browser (UCSC)PIGZ
Gene fusions - Rearrangements
Tumor Fusion PortalPIGZ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIGZ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIGZ
dbVarPIGZ
ClinVarPIGZ
1000_GenomesPIGZ 
Exome Variant ServerPIGZ
ExAC (Exome Aggregation Consortium)ENSG00000119227
GNOMAD BrowserENSG00000119227
Genetic variants : HAPMAP80235
Genomic Variants (DGV)PIGZ [DGVbeta]
DECIPHERPIGZ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIGZ 
Mutations
ICGC Data PortalPIGZ 
TCGA Data PortalPIGZ 
Broad Tumor PortalPIGZ
OASIS PortalPIGZ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIGZ  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIGZ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIGZ
DgiDB (Drug Gene Interaction Database)PIGZ
DoCM (Curated mutations)PIGZ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIGZ (select a term)
intoGenPIGZ
Cancer3DPIGZ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611671   
Orphanet
DisGeNETPIGZ
MedgenPIGZ
Genetic Testing Registry PIGZ
NextProtQ86VD9 [Medical]
TSGene80235
GENETestsPIGZ
Target ValidationPIGZ
Huge Navigator PIGZ [HugePedia]
snp3D : Map Gene to Disease80235
BioCentury BCIQPIGZ
ClinGenPIGZ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80235
Chemical/Pharm GKB GenePA142671171
Clinical trialPIGZ
Miscellaneous
canSAR (ICR)PIGZ (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIGZ
EVEXPIGZ
GoPubMedPIGZ
iHOPPIGZ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:45 CET 2017

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