Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PIK3CD-AS1 (PIK3CD antisense RNA 1)

Identity

Alias_namesC1orf200
chromosome 1 open reading frame 200
Other alias
HGNC (Hugo) PIK3CD-AS1
LocusID (NCBI) 644997
Atlas_Id 71917
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 9652629 and ends at 9654586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIK3CD-AS1   32346
Cards
Entrez_Gene (NCBI)PIK3CD-AS1  644997  PIK3CD antisense RNA 1
AliasesC1orf200
GeneCards (Weizmann)PIK3CD-AS1
Ensembl hg19 (Hinxton)ENSG00000179840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179840 [Gene_View]  chr1:9652629-9654586 [Contig_View]  PIK3CD-AS1 [Vega]
ICGC DataPortalENSG00000179840
TCGA cBioPortalPIK3CD-AS1
AceView (NCBI)PIK3CD-AS1
Genatlas (Paris)PIK3CD-AS1
WikiGenes644997
SOURCE (Princeton)PIK3CD-AS1
Genetics Home Reference (NIH)PIK3CD-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PIK3CD-AS1  -     chr1:9652629-9654586 -  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIK3CD-AS1  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblPIK3CD-AS1 - 1p36.22 [CytoView hg19]  PIK3CD-AS1 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIPIK3CD-AS1 [Mapview hg19]  PIK3CD-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097325 BC016063 BC144613
RefSeq transcript (Entrez)NM_001045478
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIK3CD-AS1
Cluster EST : UnigeneHs.568595 [ NCBI ]
CGAP (NCI)Hs.568595
Alternative Splicing GalleryENSG00000179840
Gene ExpressionPIK3CD-AS1 [ NCBI-GEO ]   PIK3CD-AS1 [ EBI - ARRAY_EXPRESS ]   PIK3CD-AS1 [ SEEK ]   PIK3CD-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIK3CD-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644997
GTEX Portal (Tissue expression)PIK3CD-AS1
Human Protein AtlasENSG00000179840-PIK3CD-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SR53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SR53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SR53
Splice isoforms : SwissVarQ5SR53
PhosPhoSitePlusQ5SR53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PIK3CD-AS1
DMDM Disease mutations644997
Blocks (Seattle)PIK3CD-AS1
SuperfamilyQ5SR53
Human Protein Atlas [tissue]ENSG00000179840-PIK3CD-AS1 [tissue]
Peptide AtlasQ5SR53
IPIIPI00646025   
Protein Interaction databases
DIP (DOE-UCLA)Q5SR53
IntAct (EBI)Q5SR53
FunCoupENSG00000179840
BioGRIDPIK3CD-AS1
STRING (EMBL)PIK3CD-AS1
ZODIACPIK3CD-AS1
Ontologies - Pathways
QuickGOQ5SR53
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPIK3CD-AS1
Atlas of Cancer Signalling NetworkPIK3CD-AS1
Wikipedia pathwaysPIK3CD-AS1
Orthology - Evolution
OrthoDB644997
GeneTree (enSembl)ENSG00000179840
Phylogenetic Trees/Animal Genes : TreeFamPIK3CD-AS1
HOVERGENQ5SR53
HOGENOMQ5SR53
Homologs : HomoloGenePIK3CD-AS1
Homology/Alignments : Family Browser (UCSC)PIK3CD-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalPIK3CD-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIK3CD-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIK3CD-AS1
dbVarPIK3CD-AS1
ClinVarPIK3CD-AS1
1000_GenomesPIK3CD-AS1 
Exome Variant ServerPIK3CD-AS1
ExAC (Exome Aggregation Consortium)ENSG00000179840
GNOMAD BrowserENSG00000179840
Genetic variants : HAPMAP644997
Genomic Variants (DGV)PIK3CD-AS1 [DGVbeta]
DECIPHERPIK3CD-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIK3CD-AS1 
Mutations
ICGC Data PortalPIK3CD-AS1 
TCGA Data PortalPIK3CD-AS1 
Broad Tumor PortalPIK3CD-AS1
OASIS PortalPIK3CD-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIK3CD-AS1
BioMutasearch PIK3CD-AS1
DgiDB (Drug Gene Interaction Database)PIK3CD-AS1
DoCM (Curated mutations)PIK3CD-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIK3CD-AS1 (select a term)
intoGenPIK3CD-AS1
Cancer3DPIK3CD-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPIK3CD-AS1
MedgenPIK3CD-AS1
Genetic Testing Registry PIK3CD-AS1
NextProtQ5SR53 [Medical]
TSGene644997
GENETestsPIK3CD-AS1
Target ValidationPIK3CD-AS1
Huge Navigator PIK3CD-AS1 [HugePedia]
snp3D : Map Gene to Disease644997
BioCentury BCIQPIK3CD-AS1
ClinGenPIK3CD-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644997
Chemical/Pharm GKB GenePA164717023
Clinical trialPIK3CD-AS1
Miscellaneous
canSAR (ICR)PIK3CD-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIK3CD-AS1
EVEXPIK3CD-AS1
GoPubMedPIK3CD-AS1
iHOPPIK3CD-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:22 CET 2017

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