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PILRA (paired immunoglobin like type 2 receptor alpha)

Identity

Alias_namespaired immunoglobin-like type 2 receptor alpha
Alias_symbol (synonym)FDF03
Other alias
HGNC (Hugo) PILRA
LocusID (NCBI) 29992
Atlas_Id 56280
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100373445 and ends at 100400099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PILRB (7q22.1) / PILRA (7q22.1)POLR1A (2p11.2) / PILRA (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PILRA   20396
Cards
Entrez_Gene (NCBI)PILRA  29992  paired immunoglobin like type 2 receptor alpha
AliasesFDF03
GeneCards (Weizmann)PILRA
Ensembl hg19 (Hinxton)ENSG00000085514 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085514 [Gene_View]  ENSG00000085514 [Sequence]  chr7:100373445-100400099 [Contig_View]  PILRA [Vega]
ICGC DataPortalENSG00000085514
TCGA cBioPortalPILRA
AceView (NCBI)PILRA
Genatlas (Paris)PILRA
WikiGenes29992
SOURCE (Princeton)PILRA
Genetics Home Reference (NIH)PILRA
Genomic and cartography
GoldenPath hg38 (UCSC)PILRA  -     chr7:100373445-100400099 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PILRA  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblPILRA - 7q22.1 [CytoView hg19]  PILRA - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIPILRA [Mapview hg19]  PILRA [Mapview hg38]
OMIM605341   
Gene and transcription
Genbank (Entrez)AF161080 AJ400841 AJ400842 AJ400843 AK298731
RefSeq transcript (Entrez)NM_013439 NM_178272 NM_178273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PILRA
Cluster EST : UnigeneHs.444407 [ NCBI ]
CGAP (NCI)Hs.444407
Alternative Splicing GalleryENSG00000085514
Gene ExpressionPILRA [ NCBI-GEO ]   PILRA [ EBI - ARRAY_EXPRESS ]   PILRA [ SEEK ]   PILRA [ MEM ]
Gene Expression Viewer (FireBrowse)PILRA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29992
GTEX Portal (Tissue expression)PILRA
Human Protein AtlasENSG00000085514-PILRA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKJ1
Splice isoforms : SwissVarQ9UKJ1
PhosPhoSitePlusQ9UKJ1
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)PILRA
DMDM Disease mutations29992
Blocks (Seattle)PILRA
PDB (SRS)3WUZ    3WV0    4NFB    5XO2    5XOF   
PDB (PDBSum)3WUZ    3WV0    4NFB    5XO2    5XOF   
PDB (IMB)3WUZ    3WV0    4NFB    5XO2    5XOF   
PDB (RSDB)3WUZ    3WV0    4NFB    5XO2    5XOF   
Structural Biology KnowledgeBase3WUZ    3WV0    4NFB    5XO2    5XOF   
SCOP (Structural Classification of Proteins)3WUZ    3WV0    4NFB    5XO2    5XOF   
CATH (Classification of proteins structures)3WUZ    3WV0    4NFB    5XO2    5XOF   
SuperfamilyQ9UKJ1
Human Protein Atlas [tissue]ENSG00000085514-PILRA [tissue]
Peptide AtlasQ9UKJ1
HPRD05631
IPIIPI00296897   IPI00739477   IPI00184019   IPI00413956   IPI00927499   IPI00925030   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKJ1
IntAct (EBI)Q9UKJ1
FunCoupENSG00000085514
BioGRIDPILRA
STRING (EMBL)PILRA
ZODIACPILRA
Ontologies - Pathways
QuickGOQ9UKJ1
Ontology : AmiGOprotein binding  plasma membrane  signal transduction  integral component of membrane  viral process  MHC class I protein binding  regulation of immune response  extracellular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  signal transduction  integral component of membrane  viral process  MHC class I protein binding  regulation of immune response  extracellular exosome  
Pathways : KEGGHerpes simplex infection   
NDEx NetworkPILRA
Atlas of Cancer Signalling NetworkPILRA
Wikipedia pathwaysPILRA
Orthology - Evolution
OrthoDB29992
GeneTree (enSembl)ENSG00000085514
Phylogenetic Trees/Animal Genes : TreeFamPILRA
HOVERGENQ9UKJ1
HOGENOMQ9UKJ1
Homologs : HomoloGenePILRA
Homology/Alignments : Family Browser (UCSC)PILRA
Gene fusions - Rearrangements
Fusion : QuiverPILRA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPILRA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PILRA
dbVarPILRA
ClinVarPILRA
1000_GenomesPILRA 
Exome Variant ServerPILRA
ExAC (Exome Aggregation Consortium)ENSG00000085514
GNOMAD BrowserENSG00000085514
Varsome BrowserPILRA
Genetic variants : HAPMAP29992
Genomic Variants (DGV)PILRA [DGVbeta]
DECIPHERPILRA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPILRA 
Mutations
ICGC Data PortalPILRA 
TCGA Data PortalPILRA 
Broad Tumor PortalPILRA
OASIS PortalPILRA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPILRA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPILRA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PILRA
DgiDB (Drug Gene Interaction Database)PILRA
DoCM (Curated mutations)PILRA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PILRA (select a term)
intoGenPILRA
Cancer3DPILRA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605341   
Orphanet
DisGeNETPILRA
MedgenPILRA
Genetic Testing Registry PILRA
NextProtQ9UKJ1 [Medical]
TSGene29992
GENETestsPILRA
Target ValidationPILRA
Huge Navigator PILRA [HugePedia]
snp3D : Map Gene to Disease29992
BioCentury BCIQPILRA
ClinGenPILRA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29992
Chemical/Pharm GKB GenePA134873007
Clinical trialPILRA
Miscellaneous
canSAR (ICR)PILRA (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePILRA
EVEXPILRA
GoPubMedPILRA
iHOPPILRA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 6 11:30:05 CET 2018

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