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PILRB (paired immunoglobin-like type 2 receptor beta)

Identity

Alias_symbol (synonym)FDFACT1
FDFACT2
Other alias
HGNC (Hugo) PILRB
LocusID (NCBI) 29990
Atlas_Id 71921
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100358003 and ends at 100367831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PILRB (7q22.1) / IMMP2L (7q31.1)PILRB (7q22.1) / MAGI2 (7q21.11)PILRB (7q22.1) / PILRA (7q22.1)
TMEM33 (4p13) / PILRB (7q22.1)PILRB MAGI2PILRB IMMP2L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PILRB   18297
Cards
Entrez_Gene (NCBI)PILRB  29990  paired immunoglobin-like type 2 receptor beta
AliasesFDFACT1; FDFACT2
GeneCards (Weizmann)PILRB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:100358003-100367831 [Contig_View]  PILRB [Vega]
TCGA cBioPortalPILRB
AceView (NCBI)PILRB
Genatlas (Paris)PILRB
WikiGenes29990
SOURCE (Princeton)PILRB
Genetics Home Reference (NIH)PILRB
Genomic and cartography
GoldenPath hg38 (UCSC)PILRB  -     chr7:100358003-100367831 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PILRB  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblPILRB - 7q22.1 [CytoView hg19]  PILRB - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIPILRB [Mapview hg19]  PILRB [Mapview hg38]
OMIM605342   
Gene and transcription
Genbank (Entrez)AF161081 AJ400845 BC050547 HQ448575
RefSeq transcript (Entrez)NM_013440 NM_175047 NM_178238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PILRB
Cluster EST : UnigeneHs.632314 [ NCBI ]
CGAP (NCI)Hs.632314
Gene ExpressionPILRB [ NCBI-GEO ]   PILRB [ EBI - ARRAY_EXPRESS ]   PILRB [ SEEK ]   PILRB [ MEM ]
Gene Expression Viewer (FireBrowse)PILRB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29990
GTEX Portal (Tissue expression)PILRB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKJ0
Splice isoforms : SwissVarQ9UKJ0
PhosPhoSitePlusQ9UKJ0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)PILRB
DMDM Disease mutations29990
Blocks (Seattle)PILRB
PDB (SRS)4NFC    4NFD   
PDB (PDBSum)4NFC    4NFD   
PDB (IMB)4NFC    4NFD   
PDB (RSDB)4NFC    4NFD   
Structural Biology KnowledgeBase4NFC    4NFD   
SCOP (Structural Classification of Proteins)4NFC    4NFD   
CATH (Classification of proteins structures)4NFC    4NFD   
SuperfamilyQ9UKJ0
Peptide AtlasQ9UKJ0
IPIIPI00186781   IPI00738353   IPI00032366   IPI00969536   IPI00177811   IPI00943103   IPI00924674   IPI00925302   IPI00926584   IPI00926780   IPI00927020   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKJ0
IntAct (EBI)Q9UKJ0
BioGRIDPILRB
STRING (EMBL)PILRB
ZODIACPILRB
Ontologies - Pathways
QuickGOQ9UKJ0
Ontology : AmiGOprotein binding  integral component of plasma membrane  transmembrane receptor protein tyrosine kinase signaling pathway  activation of transmembrane receptor protein tyrosine kinase activity  MHC class I protein binding  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  transmembrane receptor protein tyrosine kinase signaling pathway  activation of transmembrane receptor protein tyrosine kinase activity  MHC class I protein binding  
NDEx NetworkPILRB
Atlas of Cancer Signalling NetworkPILRB
Wikipedia pathwaysPILRB
Orthology - Evolution
OrthoDB29990
Phylogenetic Trees/Animal Genes : TreeFamPILRB
HOVERGENQ9UKJ0
HOGENOMQ9UKJ0
Homologs : HomoloGenePILRB
Homology/Alignments : Family Browser (UCSC)PILRB
Gene fusions - Rearrangements
Fusion: TCGAPILRB MAGI2
Fusion: TCGAPILRB IMMP2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPILRB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PILRB
dbVarPILRB
ClinVarPILRB
1000_GenomesPILRB 
Exome Variant ServerPILRB
ExAC (Exome Aggregation Consortium)PILRB (select the gene name)
Genetic variants : HAPMAP29990
Genomic Variants (DGV)PILRB [DGVbeta]
DECIPHERPILRB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPILRB 
Mutations
ICGC Data PortalPILRB 
TCGA Data PortalPILRB 
Broad Tumor PortalPILRB
OASIS PortalPILRB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPILRB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPILRB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PILRB
DgiDB (Drug Gene Interaction Database)PILRB
DoCM (Curated mutations)PILRB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PILRB (select a term)
intoGenPILRB
Cancer3DPILRB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605342   
Orphanet
MedgenPILRB
Genetic Testing Registry PILRB
NextProtQ9UKJ0 [Medical]
TSGene29990
GENETestsPILRB
Target ValidationPILRB
Huge Navigator PILRB [HugePedia]
snp3D : Map Gene to Disease29990
BioCentury BCIQPILRB
ClinGenPILRB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29990
Chemical/Pharm GKB GenePA134906700
Clinical trialPILRB
Miscellaneous
canSAR (ICR)PILRB (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePILRB
EVEXPILRB
GoPubMedPILRB
iHOPPILRB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:33 CEST 2017

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