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PINLYP (phospholipase A2 inhibitor and LY6/PLAUR domain containing)

Identity

Other alias-
HGNC (Hugo) PINLYP
LocusID (NCBI) 390940
Atlas_Id 71925
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43576800 and ends at 43582104 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PINLYP   44206
Cards
Entrez_Gene (NCBI)PINLYP  390940  phospholipase A2 inhibitor and LY6/PLAUR domain containing
Aliases
GeneCards (Weizmann)PINLYP
Ensembl hg19 (Hinxton)ENSG00000234465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234465 [Gene_View]  chr19:43576800-43582104 [Contig_View]  PINLYP [Vega]
ICGC DataPortalENSG00000234465
TCGA cBioPortalPINLYP
AceView (NCBI)PINLYP
Genatlas (Paris)PINLYP
WikiGenes390940
SOURCE (Princeton)PINLYP
Genetics Home Reference (NIH)PINLYP
Genomic and cartography
GoldenPath hg38 (UCSC)PINLYP  -     chr19:43576800-43582104 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PINLYP  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblPINLYP - 19q13.31 [CytoView hg19]  PINLYP - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIPINLYP [Mapview hg19]  PINLYP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI298189 AK129550 AK296854 BC071811 CN355575
RefSeq transcript (Entrez)NM_001193621 NM_001193622 NM_001321124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PINLYP
Cluster EST : UnigeneHs.22049 [ NCBI ]
CGAP (NCI)Hs.22049
Alternative Splicing GalleryENSG00000234465
Gene ExpressionPINLYP [ NCBI-GEO ]   PINLYP [ EBI - ARRAY_EXPRESS ]   PINLYP [ SEEK ]   PINLYP [ MEM ]
Gene Expression Viewer (FireBrowse)PINLYP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390940
GTEX Portal (Tissue expression)PINLYP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC86
Splice isoforms : SwissVarA6NC86
PhosPhoSitePlusA6NC86
Domains : Interpro (EBI)LY6_UPA_recep-like    PLipase_A2_inh   
Domain families : Pfam (Sanger)PLA2_inh (PF02988)    UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam02988    pfam00021   
Conserved Domain (NCBI)PINLYP
DMDM Disease mutations390940
Blocks (Seattle)PINLYP
SuperfamilyA6NC86
Human Protein AtlasENSG00000234465
Peptide AtlasA6NC86
IPIIPI00983701   IPI00028242   
Protein Interaction databases
DIP (DOE-UCLA)A6NC86
IntAct (EBI)A6NC86
FunCoupENSG00000234465
BioGRIDPINLYP
STRING (EMBL)PINLYP
ZODIACPINLYP
Ontologies - Pathways
QuickGOA6NC86
Ontology : AmiGOphospholipase inhibitor activity  extracellular region  negative regulation of catalytic activity  
Ontology : EGO-EBIphospholipase inhibitor activity  extracellular region  negative regulation of catalytic activity  
NDEx NetworkPINLYP
Atlas of Cancer Signalling NetworkPINLYP
Wikipedia pathwaysPINLYP
Orthology - Evolution
OrthoDB390940
GeneTree (enSembl)ENSG00000234465
Phylogenetic Trees/Animal Genes : TreeFamPINLYP
HOVERGENA6NC86
HOGENOMA6NC86
Homologs : HomoloGenePINLYP
Homology/Alignments : Family Browser (UCSC)PINLYP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPINLYP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PINLYP
dbVarPINLYP
ClinVarPINLYP
1000_GenomesPINLYP 
Exome Variant ServerPINLYP
ExAC (Exome Aggregation Consortium)PINLYP (select the gene name)
Genetic variants : HAPMAP390940
Genomic Variants (DGV)PINLYP [DGVbeta]
DECIPHERPINLYP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPINLYP 
Mutations
ICGC Data PortalPINLYP 
TCGA Data PortalPINLYP 
Broad Tumor PortalPINLYP
OASIS PortalPINLYP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPINLYP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PINLYP
DgiDB (Drug Gene Interaction Database)PINLYP
DoCM (Curated mutations)PINLYP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PINLYP (select a term)
intoGenPINLYP
Cancer3DPINLYP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPINLYP
Genetic Testing Registry PINLYP
NextProtA6NC86 [Medical]
TSGene390940
GENETestsPINLYP
Huge Navigator PINLYP [HugePedia]
snp3D : Map Gene to Disease390940
BioCentury BCIQPINLYP
ClinGenPINLYP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390940
Chemical/Pharm GKB GenePA166049118
Clinical trialPINLYP
Miscellaneous
canSAR (ICR)PINLYP (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePINLYP
EVEXPINLYP
GoPubMedPINLYP
iHOPPINLYP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:48:39 CEST 2017

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