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PIP4P1 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1)

Identity

Alias_namesC14orf9
TMEM55B
chromosome 14 open reading frame 9
transmembrane protein 55B
Alias_symbol (synonym)MGC26684
Other alias
HGNC (Hugo) PIP4P1
LocusID (NCBI) 90809
Atlas_Id 79420
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20457853 and ends at 20461612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PIP4P1   19299
Cards
Entrez_Gene (NCBI)PIP4P1  90809  phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
AliasesC14orf9; TMEM55B
GeneCards (Weizmann)PIP4P1
Ensembl hg19 (Hinxton)ENSG00000165782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165782 [Gene_View]  chr14:20457853-20461612 [Contig_View]  PIP4P1 [Vega]
ICGC DataPortalENSG00000165782
TCGA cBioPortalPIP4P1
AceView (NCBI)PIP4P1
Genatlas (Paris)PIP4P1
WikiGenes90809
SOURCE (Princeton)PIP4P1
Genetics Home Reference (NIH)PIP4P1
Genomic and cartography
GoldenPath hg38 (UCSC)PIP4P1  -     chr14:20457853-20461612 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIP4P1  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblPIP4P1 - 14q11.2 [CytoView hg19]  PIP4P1 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIPIP4P1 [Mapview hg19]  PIP4P1 [Mapview hg38]
OMIM609865   
Gene and transcription
Genbank (Entrez)AK314021 AL137727 AM392745 BC002867 BC020947
RefSeq transcript (Entrez)NM_001100814 NM_144568
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIP4P1
Cluster EST : UnigeneHs.7001 [ NCBI ]
CGAP (NCI)Hs.7001
Alternative Splicing GalleryENSG00000165782
Gene ExpressionPIP4P1 [ NCBI-GEO ]   PIP4P1 [ EBI - ARRAY_EXPRESS ]   PIP4P1 [ SEEK ]   PIP4P1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIP4P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90809
GTEX Portal (Tissue expression)PIP4P1
Human Protein AtlasENSG00000165782-PIP4P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T03
Splice isoforms : SwissVarQ86T03
Catalytic activity : Enzyme3.1.3.78 [ Enzyme-Expasy ]   3.1.3.783.1.3.78 [ IntEnz-EBI ]   3.1.3.78 [ BRENDA ]   3.1.3.78 [ KEGG ]   
PhosPhoSitePlusQ86T03
Domains : Interpro (EBI)PtdIns-P2-Ptase   
Domain families : Pfam (Sanger)Tmemb_55A (PF09788)   
Domain families : Pfam (NCBI)pfam09788   
Conserved Domain (NCBI)PIP4P1
DMDM Disease mutations90809
Blocks (Seattle)PIP4P1
SuperfamilyQ86T03
Human Protein Atlas [tissue]ENSG00000165782-PIP4P1 [tissue]
Peptide AtlasQ86T03
IPIIPI00030530   IPI00332278   IPI00332279   IPI01025634   IPI01025273   IPI01025378   
Protein Interaction databases
DIP (DOE-UCLA)Q86T03
IntAct (EBI)Q86T03
FunCoupENSG00000165782
BioGRIDPIP4P1
STRING (EMBL)PIP4P1
ZODIACPIP4P1
Ontologies - Pathways
QuickGOQ86T03
Ontology : AmiGOnucleoplasm  lysosomal membrane  phospholipid metabolic process  integral component of membrane  late endosome membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
Ontology : EGO-EBInucleoplasm  lysosomal membrane  phospholipid metabolic process  integral component of membrane  late endosome membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
NDEx NetworkPIP4P1
Atlas of Cancer Signalling NetworkPIP4P1
Wikipedia pathwaysPIP4P1
Orthology - Evolution
OrthoDB90809
GeneTree (enSembl)ENSG00000165782
Phylogenetic Trees/Animal Genes : TreeFamPIP4P1
HOVERGENQ86T03
HOGENOMQ86T03
Homologs : HomoloGenePIP4P1
Homology/Alignments : Family Browser (UCSC)PIP4P1
Gene fusions - Rearrangements
Tumor Fusion PortalPIP4P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIP4P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIP4P1
dbVarPIP4P1
ClinVarPIP4P1
1000_GenomesPIP4P1 
Exome Variant ServerPIP4P1
ExAC (Exome Aggregation Consortium)ENSG00000165782
GNOMAD BrowserENSG00000165782
Genetic variants : HAPMAP90809
Genomic Variants (DGV)PIP4P1 [DGVbeta]
DECIPHERPIP4P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIP4P1 
Mutations
ICGC Data PortalPIP4P1 
TCGA Data PortalPIP4P1 
Broad Tumor PortalPIP4P1
OASIS PortalPIP4P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIP4P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIP4P1
DgiDB (Drug Gene Interaction Database)PIP4P1
DoCM (Curated mutations)PIP4P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIP4P1 (select a term)
intoGenPIP4P1
Cancer3DPIP4P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609865   
Orphanet
DisGeNETPIP4P1
MedgenPIP4P1
Genetic Testing Registry PIP4P1
NextProtQ86T03 [Medical]
TSGene90809
GENETestsPIP4P1
Target ValidationPIP4P1
Huge Navigator PIP4P1 [HugePedia]
snp3D : Map Gene to Disease90809
BioCentury BCIQPIP4P1
ClinGenPIP4P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90809
Chemical/Pharm GKB GenePA134919069
Clinical trialPIP4P1
Miscellaneous
canSAR (ICR)PIP4P1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIP4P1
EVEXPIP4P1
GoPubMedPIP4P1
iHOPPIP4P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:17 CET 2017

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