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PIP4P2 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2)

Identity

Alias_namesTMEM55A
transmembrane protein 55A
Alias_symbol (synonym)DKFZp762O076
Other alias
HGNC (Hugo) PIP4P2
LocusID (NCBI) 55529
Atlas_Id 79315
Location 8q21.3  [Link to chromosome band 8q21]
Location_base_pair Starts at 90994271 and ends at 91040975 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PIP4P2   25452
Cards
Entrez_Gene (NCBI)PIP4P2  55529  phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
AliasesTMEM55A
GeneCards (Weizmann)PIP4P2
Ensembl hg19 (Hinxton)ENSG00000155099 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155099 [Gene_View]  chr8:90994271-91040975 [Contig_View]  PIP4P2 [Vega]
ICGC DataPortalENSG00000155099
TCGA cBioPortalPIP4P2
AceView (NCBI)PIP4P2
Genatlas (Paris)PIP4P2
WikiGenes55529
SOURCE (Princeton)PIP4P2
Genetics Home Reference (NIH)PIP4P2
Genomic and cartography
GoldenPath hg38 (UCSC)PIP4P2  -     chr8:90994271-91040975 -  8q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIP4P2  -     8q21.3   [Description]    (hg19-Feb_2009)
EnsemblPIP4P2 - 8q21.3 [CytoView hg19]  PIP4P2 - 8q21.3 [CytoView hg38]
Mapping of homologs : NCBIPIP4P2 [Mapview hg19]  PIP4P2 [Mapview hg38]
OMIM609864   
Gene and transcription
Genbank (Entrez)AK313783 AX775961 BC033892 CR749733 DA171968
RefSeq transcript (Entrez)NM_018710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIP4P2
Cluster EST : UnigeneHs.202517 [ NCBI ]
CGAP (NCI)Hs.202517
Alternative Splicing GalleryENSG00000155099
Gene ExpressionPIP4P2 [ NCBI-GEO ]   PIP4P2 [ EBI - ARRAY_EXPRESS ]   PIP4P2 [ SEEK ]   PIP4P2 [ MEM ]
Gene Expression Viewer (FireBrowse)PIP4P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55529
GTEX Portal (Tissue expression)PIP4P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4L2
Splice isoforms : SwissVarQ8N4L2
Catalytic activity : Enzyme3.1.3.78 [ Enzyme-Expasy ]   3.1.3.783.1.3.78 [ IntEnz-EBI ]   3.1.3.78 [ BRENDA ]   3.1.3.78 [ KEGG ]   
PhosPhoSitePlusQ8N4L2
Domains : Interpro (EBI)PtdIns-P2-Ptase   
Domain families : Pfam (Sanger)Tmemb_55A (PF09788)   
Domain families : Pfam (NCBI)pfam09788   
Conserved Domain (NCBI)PIP4P2
DMDM Disease mutations55529
Blocks (Seattle)PIP4P2
SuperfamilyQ8N4L2
Human Protein AtlasENSG00000155099
Peptide AtlasQ8N4L2
IPIIPI00175029   IPI00791405   IPI00979465   IPI00980806   IPI00789289   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4L2
IntAct (EBI)Q8N4L2
FunCoupENSG00000155099
BioGRIDPIP4P2
STRING (EMBL)PIP4P2
ZODIACPIP4P2
Ontologies - Pathways
QuickGOQ8N4L2
Ontology : AmiGOlysosomal membrane  integral component of membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
Ontology : EGO-EBIlysosomal membrane  integral component of membrane  late endosome membrane  phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity  phosphatidylinositol dephosphorylation  
NDEx NetworkPIP4P2
Atlas of Cancer Signalling NetworkPIP4P2
Wikipedia pathwaysPIP4P2
Orthology - Evolution
OrthoDB55529
GeneTree (enSembl)ENSG00000155099
Phylogenetic Trees/Animal Genes : TreeFamPIP4P2
HOVERGENQ8N4L2
HOGENOMQ8N4L2
Homologs : HomoloGenePIP4P2
Homology/Alignments : Family Browser (UCSC)PIP4P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIP4P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIP4P2
dbVarPIP4P2
ClinVarPIP4P2
1000_GenomesPIP4P2 
Exome Variant ServerPIP4P2
ExAC (Exome Aggregation Consortium)PIP4P2 (select the gene name)
Genetic variants : HAPMAP55529
Genomic Variants (DGV)PIP4P2 [DGVbeta]
DECIPHERPIP4P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIP4P2 
Mutations
ICGC Data PortalPIP4P2 
TCGA Data PortalPIP4P2 
Broad Tumor PortalPIP4P2
OASIS PortalPIP4P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIP4P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIP4P2
DgiDB (Drug Gene Interaction Database)PIP4P2
DoCM (Curated mutations)PIP4P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIP4P2 (select a term)
intoGenPIP4P2
Cancer3DPIP4P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609864   
Orphanet
MedgenPIP4P2
Genetic Testing Registry PIP4P2
NextProtQ8N4L2 [Medical]
TSGene55529
GENETestsPIP4P2
Target ValidationPIP4P2
Huge Navigator PIP4P2 [HugePedia]
snp3D : Map Gene to Disease55529
BioCentury BCIQPIP4P2
ClinGenPIP4P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55529
Chemical/Pharm GKB GenePA142670771
Clinical trialPIP4P2
Miscellaneous
canSAR (ICR)PIP4P2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIP4P2
EVEXPIP4P2
GoPubMedPIP4P2
iHOPPIP4P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:34 CEST 2017

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