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PIP5KL1 (phosphatidylinositol-4-phosphate 5-kinase like 1)

Identity

Alias_namesphosphatidylinositol-4-phosphate 5-kinase-like 1
Alias_symbol (synonym)bA203J24.5
MGC46424
Other aliasPIPKH
HGNC (Hugo) PIP5KL1
LocusID (NCBI) 138429
Atlas_Id 46713
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130683808 and ends at 130693076 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DPM2 (9q34.11) / PIP5KL1 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIP5KL1   28711
Cards
Entrez_Gene (NCBI)PIP5KL1  138429  phosphatidylinositol-4-phosphate 5-kinase like 1
AliasesPIPKH; bA203J24.5
GeneCards (Weizmann)PIP5KL1
Ensembl hg19 (Hinxton)ENSG00000167103 [Gene_View]  chr9:130683808-130693076 [Contig_View]  PIP5KL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167103 [Gene_View]  chr9:130683808-130693076 [Contig_View]  PIP5KL1 [Vega]
ICGC DataPortalENSG00000167103
TCGA cBioPortalPIP5KL1
AceView (NCBI)PIP5KL1
Genatlas (Paris)PIP5KL1
WikiGenes138429
SOURCE (Princeton)PIP5KL1
Genetics Home Reference (NIH)PIP5KL1
Genomic and cartography
GoldenPath hg19 (UCSC)PIP5KL1  -     chr9:130683808-130693076 -  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIP5KL1  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblPIP5KL1 - 9q34.11 [CytoView hg19]  PIP5KL1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIPIP5KL1 [Mapview hg19]  PIP5KL1 [Mapview hg38]
OMIM612865   
Gene and transcription
Genbank (Entrez)BC042184 BE881330 HQ448498
RefSeq transcript (Entrez)NM_001135219 NM_173492
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)PIP5KL1
Cluster EST : UnigeneHs.734928 [ NCBI ]
CGAP (NCI)Hs.734928
Alternative Splicing GalleryENSG00000167103
Gene ExpressionPIP5KL1 [ NCBI-GEO ]   PIP5KL1 [ EBI - ARRAY_EXPRESS ]   PIP5KL1 [ SEEK ]   PIP5KL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PIP5KL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138429
GTEX Portal (Tissue expression)PIP5KL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9C9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9C9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9C9
Splice isoforms : SwissVarQ5T9C9
PhosPhoSitePlusQ5T9C9
Domaine pattern : Prosite (Expaxy)PIPK (PS51455)   
Domains : Interpro (EBI)PInositol-4-P-5-kinase    PInositol-4-P-5-kinase_C    PInositol-4-P-5-kinase_core    PInositol-4-P-5-kinase_N   
Domain families : Pfam (Sanger)PIP5K (PF01504)   
Domain families : Pfam (NCBI)pfam01504   
Conserved Domain (NCBI)PIP5KL1
DMDM Disease mutations138429
Blocks (Seattle)PIP5KL1
SuperfamilyQ5T9C9
Human Protein AtlasENSG00000167103
Peptide AtlasQ5T9C9
HPRD15139
IPIIPI00783265   IPI00161706   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9C9
IntAct (EBI)Q5T9C9
FunCoupENSG00000167103
BioGRIDPIP5KL1
STRING (EMBL)PIP5KL1
ZODIACPIP5KL1
Ontologies - Pathways
QuickGOQ5T9C9
Ontology : AmiGOATP binding  cytoplasm  membrane  1-phosphatidylinositol-4-phosphate 5-kinase activity  cell projection  phosphatidylinositol phosphorylation  
Ontology : EGO-EBIATP binding  cytoplasm  membrane  1-phosphatidylinositol-4-phosphate 5-kinase activity  cell projection  phosphatidylinositol phosphorylation  
Pathways : KEGGInositol phosphate metabolism    Endocytosis   
NDEx NetworkPIP5KL1
Atlas of Cancer Signalling NetworkPIP5KL1
Wikipedia pathwaysPIP5KL1
Orthology - Evolution
OrthoDB138429
GeneTree (enSembl)ENSG00000167103
Phylogenetic Trees/Animal Genes : TreeFamPIP5KL1
HOVERGENQ5T9C9
HOGENOMQ5T9C9
Homologs : HomoloGenePIP5KL1
Homology/Alignments : Family Browser (UCSC)PIP5KL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIP5KL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIP5KL1
dbVarPIP5KL1
ClinVarPIP5KL1
1000_GenomesPIP5KL1 
Exome Variant ServerPIP5KL1
ExAC (Exome Aggregation Consortium)PIP5KL1 (select the gene name)
Genetic variants : HAPMAP138429
Genomic Variants (DGV)PIP5KL1 [DGVbeta]
DECIPHER (Syndromes)9:130683808-130693076  ENSG00000167103
CONAN: Copy Number AnalysisPIP5KL1 
Mutations
ICGC Data PortalPIP5KL1 
TCGA Data PortalPIP5KL1 
Broad Tumor PortalPIP5KL1
OASIS PortalPIP5KL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIP5KL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIP5KL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIP5KL1
DgiDB (Drug Gene Interaction Database)PIP5KL1
DoCM (Curated mutations)PIP5KL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIP5KL1 (select a term)
intoGenPIP5KL1
Cancer3DPIP5KL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612865   
Orphanet
MedgenPIP5KL1
Genetic Testing Registry PIP5KL1
NextProtQ5T9C9 [Medical]
TSGene138429
GENETestsPIP5KL1
Huge Navigator PIP5KL1 [HugePedia]
snp3D : Map Gene to Disease138429
BioCentury BCIQPIP5KL1
ClinGenPIP5KL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138429
Chemical/Pharm GKB GenePA134926015
Clinical trialPIP5KL1
Miscellaneous
canSAR (ICR)PIP5KL1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIP5KL1
EVEXPIP5KL1
GoPubMedPIP5KL1
iHOPPIP5KL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:26 CEST 2017

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