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PIPOX (pipecolic acid and sarcosine oxidase)

Identity

Alias_namespipecolic acid oxidase
Alias_symbol (synonym)LPIPOX
Other alias
HGNC (Hugo) PIPOX
LocusID (NCBI) 51268
Atlas_Id 71927
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29042900 and ends at 29057218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GON4L (1q22) / PIPOX (17q11.2)KSR1 (17q11.1) / PIPOX (17q11.2)PIPOX (17q11.2) / GGNBP2 (17q12)
PPP1R1B (17q12) / PIPOX (17q11.2)SETD2 (3p21.31) / PIPOX (17q11.2)TAOK1 (17q11.2) / PIPOX (17q11.2)
GON4L PIPOXTAOK1 PIPOXKSR1 PIPOX

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIPOX   17804
Cards
Entrez_Gene (NCBI)PIPOX  51268  pipecolic acid and sarcosine oxidase
AliasesLPIPOX
GeneCards (Weizmann)PIPOX
Ensembl hg19 (Hinxton)ENSG00000179761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179761 [Gene_View]  chr17:29042900-29057218 [Contig_View]  PIPOX [Vega]
ICGC DataPortalENSG00000179761
TCGA cBioPortalPIPOX
AceView (NCBI)PIPOX
Genatlas (Paris)PIPOX
WikiGenes51268
SOURCE (Princeton)PIPOX
Genetics Home Reference (NIH)PIPOX
Genomic and cartography
GoldenPath hg38 (UCSC)PIPOX  -     chr17:29042900-29057218 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIPOX  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblPIPOX - 17q11.2 [CytoView hg19]  PIPOX - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIPIPOX [Mapview hg19]  PIPOX [Mapview hg38]
OMIM616713   
Gene and transcription
Genbank (Entrez)AF134593 AF136970 AK022773 AK027498 BC008960
RefSeq transcript (Entrez)NM_016518
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIPOX
Cluster EST : UnigeneHs.462585 [ NCBI ]
CGAP (NCI)Hs.462585
Alternative Splicing GalleryENSG00000179761
Gene ExpressionPIPOX [ NCBI-GEO ]   PIPOX [ EBI - ARRAY_EXPRESS ]   PIPOX [ SEEK ]   PIPOX [ MEM ]
Gene Expression Viewer (FireBrowse)PIPOX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51268
GTEX Portal (Tissue expression)PIPOX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0Z9
Splice isoforms : SwissVarQ9P0Z9
Catalytic activity : Enzyme1.5.3.1 [ Enzyme-Expasy ]   1.5.3.11.5.3.1 [ IntEnz-EBI ]   1.5.3.1 [ BRENDA ]   1.5.3.1 [ KEGG ]   
PhosPhoSitePlusQ9P0Z9
Domains : Interpro (EBI)FAD-dep_OxRdtase    FAD/NAD-binding_dom    SoxA_mon   
Domain families : Pfam (Sanger)DAO (PF01266)   
Domain families : Pfam (NCBI)pfam01266   
Conserved Domain (NCBI)PIPOX
DMDM Disease mutations51268
Blocks (Seattle)PIPOX
SuperfamilyQ9P0Z9
Human Protein AtlasENSG00000179761
Peptide AtlasQ9P0Z9
HPRD17853
IPIIPI00554660   IPI00789103   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0Z9
IntAct (EBI)Q9P0Z9
FunCoupENSG00000179761
BioGRIDPIPOX
STRING (EMBL)PIPOX
ZODIACPIPOX
Ontologies - Pathways
QuickGOQ9P0Z9
Ontology : AmiGOreceptor binding  protein binding  peroxisome  peroxisomal matrix  lysine catabolic process  sarcosine oxidase activity  L-lysine catabolic process to acetyl-CoA via L-pipecolate  tetrahydrofolate metabolic process  L-pipecolate oxidase activity  L-pipecolate oxidase activity  L-pipecolate oxidase activity  oxidation-reduction process  
Ontology : EGO-EBIreceptor binding  protein binding  peroxisome  peroxisomal matrix  lysine catabolic process  sarcosine oxidase activity  L-lysine catabolic process to acetyl-CoA via L-pipecolate  tetrahydrofolate metabolic process  L-pipecolate oxidase activity  L-pipecolate oxidase activity  L-pipecolate oxidase activity  oxidation-reduction process  
Pathways : KEGGGlycine, serine and threonine metabolism    Lysine degradation    Peroxisome   
NDEx NetworkPIPOX
Atlas of Cancer Signalling NetworkPIPOX
Wikipedia pathwaysPIPOX
Orthology - Evolution
OrthoDB51268
GeneTree (enSembl)ENSG00000179761
Phylogenetic Trees/Animal Genes : TreeFamPIPOX
HOVERGENQ9P0Z9
HOGENOMQ9P0Z9
Homologs : HomoloGenePIPOX
Homology/Alignments : Family Browser (UCSC)PIPOX
Gene fusions - Rearrangements
Fusion: TCGAGON4L PIPOX
Fusion: TCGATAOK1 PIPOX
Fusion: TCGAKSR1 PIPOX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIPOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIPOX
dbVarPIPOX
ClinVarPIPOX
1000_GenomesPIPOX 
Exome Variant ServerPIPOX
ExAC (Exome Aggregation Consortium)PIPOX (select the gene name)
Genetic variants : HAPMAP51268
Genomic Variants (DGV)PIPOX [DGVbeta]
DECIPHERPIPOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIPOX 
Mutations
ICGC Data PortalPIPOX 
TCGA Data PortalPIPOX 
Broad Tumor PortalPIPOX
OASIS PortalPIPOX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIPOX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIPOX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIPOX
DgiDB (Drug Gene Interaction Database)PIPOX
DoCM (Curated mutations)PIPOX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIPOX (select a term)
intoGenPIPOX
Cancer3DPIPOX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616713   
Orphanet
MedgenPIPOX
Genetic Testing Registry PIPOX
NextProtQ9P0Z9 [Medical]
TSGene51268
GENETestsPIPOX
Target ValidationPIPOX
Huge Navigator PIPOX [HugePedia]
snp3D : Map Gene to Disease51268
BioCentury BCIQPIPOX
ClinGenPIPOX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51268
Chemical/Pharm GKB GenePA33332
Clinical trialPIPOX
Miscellaneous
canSAR (ICR)PIPOX (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIPOX
EVEXPIPOX
GoPubMedPIPOX
iHOPPIPOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:35 CEST 2017

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