Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PIPOX (pipecolic acid and sarcosine oxidase)

Identity

Alias (NCBI)LPIPOX
HGNC (Hugo) PIPOX
HGNC Alias symbLPIPOX
HGNC Alias nameL-pipecolic acid oxidase
HGNC Previous namepipecolic acid oxidase
LocusID (NCBI) 51268
Atlas_Id 71927
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29043141 and ends at 29057216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GON4L (1q22) / PIPOX (17q11.2)KSR1 (17q11.1) / PIPOX (17q11.2)PIPOX (17q11.2) / GGNBP2 (17q12)
PPP1R1B (17q12) / PIPOX (17q11.2)SETD2 (3p21.31) / PIPOX (17q11.2)TAOK1 (17q11.2) / PIPOX (17q11.2)
GON4L PIPOXTAOK1 PIPOXKSR1 PIPOX

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIPOX   17804
Cards
Entrez_Gene (NCBI)PIPOX    pipecolic acid and sarcosine oxidase
AliasesLPIPOX
GeneCards (Weizmann)PIPOX
Ensembl hg19 (Hinxton)ENSG00000179761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179761 [Gene_View]  ENSG00000179761 [Sequence]  chr17:29043141-29057216 [Contig_View]  PIPOX [Vega]
ICGC DataPortalENSG00000179761
TCGA cBioPortalPIPOX
AceView (NCBI)PIPOX
Genatlas (Paris)PIPOX
SOURCE (Princeton)PIPOX
Genetics Home Reference (NIH)PIPOX
Genomic and cartography
GoldenPath hg38 (UCSC)PIPOX  -     chr17:29043141-29057216 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIPOX  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPIPOX - 17q11.2 [CytoView hg19]  PIPOX - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000179761
Genome Data Viewer NCBIPIPOX [Mapview hg19]  
OMIM616713   
Gene and transcription
Genbank (Entrez)AF134593 AF136970 AK022773 AK027498 BC008960
RefSeq transcript (Entrez)NM_016518
Consensus coding sequences : CCDS (NCBI)PIPOX
Gene ExpressionPIPOX [ NCBI-GEO ]   PIPOX [ EBI - ARRAY_EXPRESS ]   PIPOX [ SEEK ]   PIPOX [ MEM ]
Gene Expression Viewer (FireBrowse)PIPOX [ Firebrowse - Broad ]
GenevisibleExpression of PIPOX in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51268
GTEX Portal (Tissue expression)PIPOX
Human Protein AtlasENSG00000179761-PIPOX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0Z9
Catalytic activity : Enzyme1.5.3.1 [ Enzyme-Expasy ]   1.5.3.11.5.3.1 [ IntEnz-EBI ]   1.5.3.1 [ BRENDA ]   1.5.3.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9P0Z9
Domains : Interpro (EBI)FAD-dep_OxRdtase    FAD/NAD-bd_sf    SoxA_mon   
Domain families : Pfam (Sanger)DAO (PF01266)   
Domain families : Pfam (NCBI)pfam01266   
Conserved Domain (NCBI)PIPOX
SuperfamilyQ9P0Z9
AlphaFold pdb e-kbQ9P0Z9   
Human Protein Atlas [tissue]ENSG00000179761-PIPOX [tissue]
HPRD17853
Protein Interaction databases
DIP (DOE-UCLA)Q9P0Z9
IntAct (EBI)Q9P0Z9
BioGRIDPIPOX
STRING (EMBL)PIPOX
ZODIACPIPOX
Ontologies - Pathways
QuickGOQ9P0Z9
Ontology : AmiGOprotein binding  peroxisome  peroxisome  peroxisomal matrix  cytosol  lysine catabolic process  protein localization  sarcosine oxidase activity  sarcosine oxidase activity  L-lysine catabolic process to acetyl-CoA via L-pipecolate  L-lysine catabolic process to acetyl-CoA via L-pipecolate  tetrahydrofolate metabolic process  L-pipecolate oxidase activity  L-pipecolate oxidase activity  L-pipecolate oxidase activity  
Ontology : EGO-EBIprotein binding  peroxisome  peroxisome  peroxisomal matrix  cytosol  lysine catabolic process  protein localization  sarcosine oxidase activity  sarcosine oxidase activity  L-lysine catabolic process to acetyl-CoA via L-pipecolate  L-lysine catabolic process to acetyl-CoA via L-pipecolate  tetrahydrofolate metabolic process  L-pipecolate oxidase activity  L-pipecolate oxidase activity  L-pipecolate oxidase activity  
Pathways : KEGGLysine degradation    Glycine, serine and threonine metabolism   
NDEx NetworkPIPOX
Atlas of Cancer Signalling NetworkPIPOX
Wikipedia pathwaysPIPOX
Orthology - Evolution
OrthoDB51268
GeneTree (enSembl)ENSG00000179761
Phylogenetic Trees/Animal Genes : TreeFamPIPOX
Homologs : HomoloGenePIPOX
Homology/Alignments : Family Browser (UCSC)PIPOX
Gene fusions - Rearrangements
Fusion : QuiverPIPOX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIPOX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIPOX
dbVarPIPOX
ClinVarPIPOX
MonarchPIPOX
1000_GenomesPIPOX 
Exome Variant ServerPIPOX
GNOMAD BrowserENSG00000179761
Varsome BrowserPIPOX
ACMGPIPOX variants
VarityQ9P0Z9
Genomic Variants (DGV)PIPOX [DGVbeta]
DECIPHERPIPOX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIPOX 
Mutations
ICGC Data PortalPIPOX 
TCGA Data PortalPIPOX 
Broad Tumor PortalPIPOX
OASIS PortalPIPOX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIPOX  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPIPOX
Mutations and Diseases : HGMDPIPOX
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIPOX
DgiDB (Drug Gene Interaction Database)PIPOX
DoCM (Curated mutations)PIPOX
CIViC (Clinical Interpretations of Variants in Cancer)PIPOX
Cancer3DPIPOX
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616713   
Orphanet
DisGeNETPIPOX
MedgenPIPOX
Genetic Testing Registry PIPOX
NextProtQ9P0Z9 [Medical]
GENETestsPIPOX
Target ValidationPIPOX
Huge Navigator PIPOX [HugePedia]
ClinGenPIPOX
Clinical trials, drugs, therapy
MyCancerGenomePIPOX
Protein Interactions : CTDPIPOX
Pharm GKB GenePA33332
PharosQ9P0Z9
Clinical trialPIPOX
Miscellaneous
canSAR (ICR)PIPOX
HarmonizomePIPOX
DataMed IndexPIPOX
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIPOX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:16:14 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.