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PIPSL (PIP5K1A and PSMD4-like, pseudogene)

Identity

Alias_namesPSMD4P2
PIP5K1L1
proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, pseudogene 2
phosphatidylinositol-4-phosphate 5-kinase, type I-like 1
PIP5K1A and PSMD4-like
Alias_symbol (synonym)PIP5K1A-PSMD4
PIP5K1P3
Other aliasbA429H9.1
HGNC (Hugo) PIPSL
LocusID (NCBI) 266971
Atlas_Id 52506
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 95717897 and ends at 95721672 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIPSL   23733
Cards
Entrez_Gene (NCBI)PIPSL  266971  PIP5K1A and PSMD4-like, pseudogene
AliasesPIP5K1L1; PIP5K1P3; PSMD4P2; bA429H9.1
GeneCards (Weizmann)PIPSL
Ensembl hg19 (Hinxton)ENSG00000180764 [Gene_View]  chr10:95717897-95721672 [Contig_View]  PIPSL [Vega]
Ensembl hg38 (Hinxton)ENSG00000180764 [Gene_View]  chr10:95717897-95721672 [Contig_View]  PIPSL [Vega]
ICGC DataPortalENSG00000180764
TCGA cBioPortalPIPSL
AceView (NCBI)PIPSL
Genatlas (Paris)PIPSL
WikiGenes266971
SOURCE (Princeton)PIPSL
Genetics Home Reference (NIH)PIPSL
Genomic and cartography
GoldenPath hg19 (UCSC)PIPSL  -     chr10:95717897-95721672 -  10q23.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PIPSL  -     10q23.33   [Description]    (hg38-Dec_2013)
EnsemblPIPSL - 10q23.33 [CytoView hg19]  PIPSL - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBIPIPSL [Mapview hg19]  PIPSL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC068549
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_002395 NG_006440 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)PIPSL
Cluster EST : UnigeneHs.149255 [ NCBI ]
CGAP (NCI)Hs.149255
Alternative Splicing GalleryENSG00000180764
Gene ExpressionPIPSL [ NCBI-GEO ]   PIPSL [ EBI - ARRAY_EXPRESS ]   PIPSL [ SEEK ]   PIPSL [ MEM ]
Gene Expression Viewer (FireBrowse)PIPSL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266971
GTEX Portal (Tissue expression)PIPSL
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A3N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A3N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A3N6
Splice isoforms : SwissVarA2A3N6
PhosPhoSitePlusA2A3N6
Domaine pattern : Prosite (Expaxy)PIPK (PS51455)    VWFA (PS50234)   
Domains : Interpro (EBI)PInositol-4-P-5-kinase    PInositol-4-P-5-kinase_C    PInositol-4-P-5-kinase_core    PInositol-4-P-5-kinase_N    PInositol-4P-5-kinase_core_sub    VWF_A   
Domain families : Pfam (Sanger)PIP5K (PF01504)    VWA_2 (PF13519)   
Domain families : Pfam (NCBI)pfam01504    pfam13519   
Domain families : Smart (EMBL)PIPKc (SM00330)  VWA (SM00327)  
Conserved Domain (NCBI)PIPSL
DMDM Disease mutations266971
Blocks (Seattle)PIPSL
SuperfamilyA2A3N6
Human Protein AtlasENSG00000180764
Peptide AtlasA2A3N6
IPIIPI00419692   
Protein Interaction databases
DIP (DOE-UCLA)A2A3N6
IntAct (EBI)A2A3N6
FunCoupENSG00000180764
BioGRIDPIPSL
STRING (EMBL)PIPSL
ZODIACPIPSL
Ontologies - Pathways
QuickGOA2A3N6
Ontology : AmiGOcytoplasm  phosphatidylinositol phosphate kinase activity  phosphatidylinositol phosphorylation  
Ontology : EGO-EBIcytoplasm  phosphatidylinositol phosphate kinase activity  phosphatidylinositol phosphorylation  
NDEx NetworkPIPSL
Atlas of Cancer Signalling NetworkPIPSL
Wikipedia pathwaysPIPSL
Orthology - Evolution
OrthoDB266971
GeneTree (enSembl)ENSG00000180764
Phylogenetic Trees/Animal Genes : TreeFamPIPSL
HOVERGENA2A3N6
HOGENOMA2A3N6
Homologs : HomoloGenePIPSL
Homology/Alignments : Family Browser (UCSC)PIPSL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIPSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIPSL
dbVarPIPSL
ClinVarPIPSL
1000_GenomesPIPSL 
Exome Variant ServerPIPSL
ExAC (Exome Aggregation Consortium)PIPSL (select the gene name)
Genetic variants : HAPMAP266971
Genomic Variants (DGV)PIPSL [DGVbeta]
DECIPHER (Syndromes)10:95717897-95721672  ENSG00000180764
CONAN: Copy Number AnalysisPIPSL 
Mutations
ICGC Data PortalPIPSL 
TCGA Data PortalPIPSL 
Broad Tumor PortalPIPSL
OASIS PortalPIPSL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIPSL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIPSL
DgiDB (Drug Gene Interaction Database)PIPSL
DoCM (Curated mutations)PIPSL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIPSL (select a term)
intoGenPIPSL
Cancer3DPIPSL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPIPSL
Genetic Testing Registry PIPSL
NextProtA2A3N6 [Medical]
TSGene266971
GENETestsPIPSL
Huge Navigator PIPSL [HugePedia]
snp3D : Map Gene to Disease266971
BioCentury BCIQPIPSL
ClinGenPIPSL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD266971
Chemical/Pharm GKB GenePA134987143
Clinical trialPIPSL
Miscellaneous
canSAR (ICR)PIPSL (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIPSL
EVEXPIPSL
GoPubMedPIPSL
iHOPPIPSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:21:29 CET 2017

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