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PIPSL (PIP5K1A and PSMD4 like (pseudogene))

Identity

Alias (NCBI)PIP5K1L1
PIP5K1P3
PSMD4P2
bA429H9.1
HGNC (Hugo) PIPSL
HGNC Alias symbPIP5K1A-PSMD4
PIP5K1P3
HGNC Previous namePSMD4P2
 PIP5K1L1
HGNC Previous nameproteasome (prosome, macropain) 26S subunit, non-ATPase, 4, pseudogene 2
 phosphatidylinositol-4-phosphate 5-kinase, type I-like 1
 PIP5K1A and PSMD4-like
 PIP5K1A and PSMD4-like, pseudogene
LocusID (NCBI) 266971
Atlas_Id 52506
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93958140 and ends at 93961915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PIPSL   23733
Cards
Entrez_Gene (NCBI)PIPSL    PIP5K1A and PSMD4 like (pseudogene)
AliasesPIP5K1L1; PIP5K1P3; PSMD4P2; bA429H9.1
GeneCards (Weizmann)PIPSL
Ensembl hg19 (Hinxton)ENSG00000180764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180764 [Gene_View]  ENSG00000180764 [Sequence]  chr10:93958140-93961915 [Contig_View]  PIPSL [Vega]
ICGC DataPortalENSG00000180764
TCGA cBioPortalPIPSL
AceView (NCBI)PIPSL
Genatlas (Paris)PIPSL
SOURCE (Princeton)PIPSL
Genetics Home Reference (NIH)PIPSL
Genomic and cartography
GoldenPath hg38 (UCSC)PIPSL  -     chr10:93958140-93961915 -  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIPSL  -     10q23.33   [Description]    (hg19-Feb_2009)
GoldenPathPIPSL - 10q23.33 [CytoView hg19]  PIPSL - 10q23.33 [CytoView hg38]
ImmunoBaseENSG00000180764
Genome Data Viewer NCBIPIPSL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC068549
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)PIPSL
Gene ExpressionPIPSL [ NCBI-GEO ]   PIPSL [ EBI - ARRAY_EXPRESS ]   PIPSL [ SEEK ]   PIPSL [ MEM ]
Gene Expression Viewer (FireBrowse)PIPSL [ Firebrowse - Broad ]
GenevisibleExpression of PIPSL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266971
GTEX Portal (Tissue expression)PIPSL
Human Protein AtlasENSG00000180764-PIPSL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A3N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A3N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A3N6
PhosPhoSitePlusA2A3N6
Domaine pattern : Prosite (Expaxy)PIPK (PS51455)    VWFA (PS50234)   
Domains : Interpro (EBI)PInositol-4-P-5-kinase    PInositol-4-P-5-kinase_C    PInositol-4-P-5-kinase_core    PInositol-4-P-5-kinase_N    VWF_A    vWFA_dom_sf   
Domain families : Pfam (Sanger)PIP5K (PF01504)    VWA_2 (PF13519)   
Domain families : Pfam (NCBI)pfam01504    pfam13519   
Domain families : Smart (EMBL)PIPKc (SM00330)  VWA (SM00327)  
Conserved Domain (NCBI)PIPSL
SuperfamilyA2A3N6
AlphaFold pdb e-kbA2A3N6   
Human Protein Atlas [tissue]ENSG00000180764-PIPSL [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A2A3N6
IntAct (EBI)A2A3N6
BioGRIDPIPSL
STRING (EMBL)PIPSL
ZODIACPIPSL
Ontologies - Pathways
QuickGOA2A3N6
Ontology : AmiGOcytoplasm  phosphatidylinositol phosphate kinase activity  phosphatidylinositol phosphate biosynthetic process  
Ontology : EGO-EBIcytoplasm  phosphatidylinositol phosphate kinase activity  phosphatidylinositol phosphate biosynthetic process  
NDEx NetworkPIPSL
Atlas of Cancer Signalling NetworkPIPSL
Wikipedia pathwaysPIPSL
Orthology - Evolution
OrthoDB266971
GeneTree (enSembl)ENSG00000180764
Phylogenetic Trees/Animal Genes : TreeFamPIPSL
Homologs : HomoloGenePIPSL
Homology/Alignments : Family Browser (UCSC)PIPSL
Gene fusions - Rearrangements
Fusion : QuiverPIPSL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIPSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIPSL
dbVarPIPSL
ClinVarPIPSL
MonarchPIPSL
1000_GenomesPIPSL 
Exome Variant ServerPIPSL
GNOMAD BrowserENSG00000180764
Varsome BrowserPIPSL
ACMGPIPSL variants
VarityA2A3N6
Genomic Variants (DGV)PIPSL [DGVbeta]
DECIPHERPIPSL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIPSL 
Mutations
ICGC Data PortalPIPSL 
TCGA Data PortalPIPSL 
Broad Tumor PortalPIPSL
OASIS PortalPIPSL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPIPSL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPIPSL
DgiDB (Drug Gene Interaction Database)PIPSL
DoCM (Curated mutations)PIPSL
CIViC (Clinical Interpretations of Variants in Cancer)PIPSL
Cancer3DPIPSL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPIPSL
MedgenPIPSL
Genetic Testing Registry PIPSL
NextProtA2A3N6 [Medical]
GENETestsPIPSL
Target ValidationPIPSL
Huge Navigator PIPSL [HugePedia]
ClinGenPIPSL
Clinical trials, drugs, therapy
MyCancerGenomePIPSL
Protein Interactions : CTDPIPSL
Pharm GKB GenePA134987143
PharosA2A3N6
Clinical trialPIPSL
Miscellaneous
canSAR (ICR)PIPSL
HarmonizomePIPSL
DataMed IndexPIPSL
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPIPSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:25:24 CEST 2021

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