Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PIR (pirin (iron-binding nuclear protein))

Identity

Other names-
HGNC (Hugo) PIR
LocusID (NCBI) 8544
Location Xp22.2
Location_base_pair Starts at 15402924 and ends at 15511711 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PIR   30048
Cards
Entrez_Gene (NCBI)PIR  8544  pirin (iron-binding nuclear protein)
GeneCards (Weizmann)PIR
Ensembl (Hinxton)ENSG00000087842 [Gene_View]  chrX:15402924-15511711 [Contig_View]  PIR [Vega]
ICGC DataPortalENSG00000087842
AceView (NCBI)PIR
Genatlas (Paris)PIR
WikiGenes8544
SOURCE (Princeton)NM_001018109 NM_003662
Genomic and cartography
GoldenPath (UCSC)PIR  -  Xp22.2   chrX:15402924-15511711 -  Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblPIR - Xp22.2 [CytoView]
Mapping of homologs : NCBIPIR [Mapview]
OMIM603329   
Gene and transcription
Genbank (Entrez)AK309656 BC002517 BT019583 BT019584 CR541822
RefSeq transcript (Entrez)NM_001018109 NM_003662
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012549 NT_167197 NW_001842360 NW_004929438
Consensus coding sequences : CCDS (NCBI)PIR
Cluster EST : UnigeneHs.732521 [ NCBI ]
CGAP (NCI)Hs.732521
Alternative Splicing : Fast-db (Paris)GSHG0031987
Alternative Splicing GalleryENSG00000087842
Gene ExpressionPIR [ NCBI-GEO ]     PIR [ SEEK ]   PIR [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00625 (Uniprot)
NextProtO00625  [Medical]
With graphics : InterProO00625
Splice isoforms : SwissVarO00625 (Swissvar)
Catalytic activity : Enzyme1.13.11.24 [ Enzyme-Expasy ]   1.13.11.241.13.11.24 [ IntEnz-EBI ]   1.13.11.24 [ BRENDA ]   1.13.11.24 [ KEGG ]   
Domains : Interpro (EBI)Pirin    Pirin_C_dom    Pirin_N_dom    RmlC-like_jellyroll    RmlC_Cupin   
Related proteins : CluSTrO00625
Domain families : Pfam (Sanger)Pirin (PF02678)    Pirin_C (PF05726)   
Domain families : Pfam (NCBI)pfam02678    pfam05726   
DMDM Disease mutations8544
Blocks (Seattle)O00625
PDB (SRS)1J1L    3ACL    4ERO    4EWA    4EWD    4EWE    4GUL    4HLT   
PDB (PDBSum)1J1L    3ACL    4ERO    4EWA    4EWD    4EWE    4GUL    4HLT   
PDB (IMB)1J1L    3ACL    4ERO    4EWA    4EWD    4EWE    4GUL    4HLT   
PDB (RSDB)1J1L    3ACL    4ERO    4EWA    4EWD    4EWE    4GUL    4HLT   
Human Protein AtlasENSG00000087842
Peptide AtlasO00625
HPRD04510
IPIIPI00012575   
Protein Interaction databases
DIP (DOE-UCLA)O00625
IntAct (EBI)O00625
FunCoupENSG00000087842
BioGRIDPIR
InParanoidO00625
Interologous Interaction database O00625
IntegromeDBPIR
STRING (EMBL)PIR
Ontologies - Pathways
Ontology : AmiGOtranscription cofactor activity  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  quercetin 2,3-dioxygenase activity  monocyte differentiation  metal ion binding  oxidation-reduction process  
Ontology : EGO-EBItranscription cofactor activity  protein binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  quercetin 2,3-dioxygenase activity  monocyte differentiation  metal ion binding  oxidation-reduction process  
Pathways : BIOCARTAY branching of actin filaments [Genes]   
Protein Interaction DatabasePIR
Wikipedia pathwaysPIR
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PIR
SNP (GeneSNP Utah)PIR
SNP : HGBasePIR
Genetic variants : HAPMAPPIR
1000_GenomesPIR 
ICGC programENSG00000087842 
CONAN: Copy Number AnalysisPIR 
Somatic Mutations in Cancer : COSMICPIR 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Mutations and Diseases : HGMDPIR
OMIM603329   
MedgenPIR
GENETestsPIR
Disease Genetic AssociationPIR
Huge Navigator PIR [HugePedia]  PIR [HugeCancerGEM]
Genomic VariantsPIR  PIR [DGVbeta]
Exome VariantPIR
dbVarPIR
ClinVarPIR
snp3D : Map Gene to Disease8544
General knowledge
Homologs : HomoloGenePIR
Homology/Alignments : Family Browser (UCSC)PIR
Phylogenetic Trees/Animal Genes : TreeFamPIR
Chemical/Protein Interactions : CTD8544
Chemical/Pharm GKB GenePA134870022
Clinical trialPIR
Cancer Resource (Charite)ENSG00000087842
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
CoreMinePIR
iHOPPIR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:08:22 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.