PIR (pirin (iron-binding nuclear protein))

Identity

Other names	-
HGNC	PIR
Location	Xp22.31
Location_base_pair	Starts at 15312845 and ends at 15421385 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PIR   30048
Entrez_Gene	PIR  8544  pirin (iron-binding nuclear protein)
	Cards
GeneCards	PIR
Ensembl	ENSG00000087842 [Gene_View]  PIR [Vega]
Genatlas	PIR
	Genomic and cartography
GoldenPath	PIR  -  Xp22.31   chrX:15312845-15421385 -  Xp22.2   [Description]    (hg18-March_2006)
Ensembl	PIR - Xp22.2 [CytoView]
NCBI	Mapview
OMIM	603329 Disease map [OMIM]
HomoloGene	PIR
	Gene and transcription
Genbank	AK309656 [ ENTREZ ]
Genbank	BC002517 [ ENTREZ ]
Genbank	BT019583 [ ENTREZ ]
Genbank	BT019584 [ ENTREZ ]
Genbank	CR541822 [ ENTREZ ]
RefSeq	NM_001018109 [ SRS ]    NM_001018109 [ ENTREZ ]
RefSeq	NM_003662 [ SRS ]    NM_003662 [ ENTREZ ]
RefSeq	AC_000066 [ SRS ]    AC_000066 [ ENTREZ ]
RefSeq	AC_000155 [ SRS ]    AC_000155 [ ENTREZ ]
RefSeq	NC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeq	NT_011757 [ SRS ]    NT_011757 [ ENTREZ ]
RefSeq	NW_001842360 [ SRS ]    NW_001842360 [ ENTREZ ]
RefSeq	NW_927700 [ SRS ]    NW_927700 [ ENTREZ ]
CCDS	PIR CCDS - NCBI
AceView	PIR AceView - NCBI
Unigene	Hs.495728 [ SRS ]    Hs.495728 [ NCBI ]
Fast-db	2271 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O00625 [ SRS]    O00625 [ EXPASY ]     O00625 [ INTERPRO ]     O00625 [ UNIPROT ] O00625 [ VarSplice FASTA ]
Interpro	IPR012093 Pirin [ SRS ]    IPR012093 Pirin [ EBI ]
Interpro	IPR008778 Pirin_C [ SRS ]    IPR008778 Pirin_C [ EBI ]
Interpro	IPR003829 Pirin_N [ SRS ]    IPR003829 Pirin_N [ EBI ]
CluSTr	O00625
Pfam	PF02678 Pirin [ SRS ]    PF02678 Pirin [ Sanger ]    pfam02678 [ NCBI-CDD ]
Pfam	PF05726 Pirin_C [ SRS ]    PF05726 Pirin_C [ Sanger ]    pfam05726 [ NCBI-CDD ]
Blocks	O00625
PDB	1J1L [ SRS ]    1J1L [ PdbSum ],   1J1L [ IMB ]   1J1L [ RSDB ]
HPRD	04510
	Protein Interaction databases
DIP	O00625
IntAct	O00625
	Polymorphism : SNP, mutations, diseases
OMIM	603329    [ map ]
GENETests	603329
SNP	PIR [dbSNP-NCBI]
SNP	NM_001018109 [SNP-NCI]
SNP	NM_003662 [SNP-NCI]
SNP	PIR [GeneSNPs - Utah]  PIR] [HGBASE - SRS]
HAPMAP	PIR [HAPMAP]
COSMIC	PIR [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PIR
Genetic Association	PIR
CDC HuGE	PIR
	General knowledge
Family Browser	PIR [UCSC Family Browser]
SOURCE	NM_001018109
SOURCE	NM_003662
SMD	Hs.495728
SAGE	Hs.495728
GO	transcription cofactor activity [Amigo]  transcription cofactor activity
GO	iron ion binding [Amigo]  iron ion binding
GO	nucleus [Amigo]  nucleus
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	metal ion binding [Amigo]  metal ion binding
BIOCARTA	Y branching of actin filaments    [Genes]
PubGene	PIR
TreeFam	PIR
CTD	8544 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PIR Related clones (RZPD - Berlin)
	PubMed
PubMed	9 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:03:47 2008