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PIRT (phosphoinositide interacting regulator of transient receptor potential channels)

Identity

Alias_namesphosphoinositide-interacting regulator of transient receptor potential channels
Other alias-
HGNC (Hugo) PIRT
LocusID (NCBI) 644139
Atlas_Id 71929
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 10822475 and ends at 10838101 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PIRT   37239
Cards
Entrez_Gene (NCBI)PIRT  644139  phosphoinositide interacting regulator of transient receptor potential channels
Aliases
GeneCards (Weizmann)PIRT
Ensembl hg19 (Hinxton)ENSG00000233670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233670 [Gene_View]  chr17:10822475-10838101 [Contig_View]  PIRT [Vega]
ICGC DataPortalENSG00000233670
TCGA cBioPortalPIRT
AceView (NCBI)PIRT
Genatlas (Paris)PIRT
WikiGenes644139
SOURCE (Princeton)PIRT
Genetics Home Reference (NIH)PIRT
Genomic and cartography
GoldenPath hg38 (UCSC)PIRT  -     chr17:10822475-10838101 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PIRT  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblPIRT - 17p12 [CytoView hg19]  PIRT - 17p12 [CytoView hg38]
Mapping of homologs : NCBIPIRT [Mapview hg19]  PIRT [Mapview hg38]
OMIM612068   
Gene and transcription
Genbank (Entrez)AK021549 AK299808 AK300493 DC332889
RefSeq transcript (Entrez)NM_001101387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PIRT
Cluster EST : UnigeneHs.553909 [ NCBI ]
CGAP (NCI)Hs.553909
Alternative Splicing GalleryENSG00000233670
Gene ExpressionPIRT [ NCBI-GEO ]   PIRT [ EBI - ARRAY_EXPRESS ]   PIRT [ SEEK ]   PIRT [ MEM ]
Gene Expression Viewer (FireBrowse)PIRT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644139
GTEX Portal (Tissue expression)PIRT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C851   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C851  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C851
Splice isoforms : SwissVarP0C851
PhosPhoSitePlusP0C851
Domains : Interpro (EBI)PIRT   
Domain families : Pfam (Sanger)PIRT (PF15099)   
Domain families : Pfam (NCBI)pfam15099   
Conserved Domain (NCBI)PIRT
DMDM Disease mutations644139
Blocks (Seattle)PIRT
SuperfamilyP0C851
Human Protein AtlasENSG00000233670
Peptide AtlasP0C851
IPIIPI00413944   
Protein Interaction databases
DIP (DOE-UCLA)P0C851
IntAct (EBI)P0C851
FunCoupENSG00000233670
BioGRIDPIRT
STRING (EMBL)PIRT
ZODIACPIRT
Ontologies - Pathways
QuickGOP0C851
Ontology : AmiGOphosphatidylinositol-3,4,5-trisphosphate binding  intracellular  plasma membrane  response to heat  integral component of membrane  ion channel binding  phosphatidylinositol-mediated signaling  behavioral response to pain  phosphatidylinositol bisphosphate binding  positive regulation of cation channel activity  
Ontology : EGO-EBIphosphatidylinositol-3,4,5-trisphosphate binding  intracellular  plasma membrane  response to heat  integral component of membrane  ion channel binding  phosphatidylinositol-mediated signaling  behavioral response to pain  phosphatidylinositol bisphosphate binding  positive regulation of cation channel activity  
NDEx NetworkPIRT
Atlas of Cancer Signalling NetworkPIRT
Wikipedia pathwaysPIRT
Orthology - Evolution
OrthoDB644139
GeneTree (enSembl)ENSG00000233670
Phylogenetic Trees/Animal Genes : TreeFamPIRT
HOVERGENP0C851
HOGENOMP0C851
Homologs : HomoloGenePIRT
Homology/Alignments : Family Browser (UCSC)PIRT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPIRT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PIRT
dbVarPIRT
ClinVarPIRT
1000_GenomesPIRT 
Exome Variant ServerPIRT
ExAC (Exome Aggregation Consortium)PIRT (select the gene name)
Genetic variants : HAPMAP644139
Genomic Variants (DGV)PIRT [DGVbeta]
DECIPHERPIRT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPIRT 
Mutations
ICGC Data PortalPIRT 
TCGA Data PortalPIRT 
Broad Tumor PortalPIRT
OASIS PortalPIRT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPIRT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPIRT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PIRT
DgiDB (Drug Gene Interaction Database)PIRT
DoCM (Curated mutations)PIRT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PIRT (select a term)
intoGenPIRT
Cancer3DPIRT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612068   
Orphanet
MedgenPIRT
Genetic Testing Registry PIRT
NextProtP0C851 [Medical]
TSGene644139
GENETestsPIRT
Target ValidationPIRT
Huge Navigator PIRT [HugePedia]
snp3D : Map Gene to Disease644139
BioCentury BCIQPIRT
ClinGenPIRT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644139
Chemical/Pharm GKB GenePA165432447
Clinical trialPIRT
Miscellaneous
canSAR (ICR)PIRT (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePIRT
EVEXPIRT
GoPubMedPIRT
iHOPPIRT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:36:25 CEST 2017

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