Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PISD (phosphatidylserine decarboxylase)

Identity

Alias_symbol (synonym)dJ858B16.2
PSDC
Other aliasDJ858B16
PSD
PSSC
HGNC (Hugo) PISD
LocusID (NCBI) 23761
Atlas_Id 54536
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 31618491 and ends at 31662564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PISD (22q12.2) / PISD (22q12.2)PISD (22q12.2) / RBL1 (20q11.23)RBL1 (20q11.23) / PISD (22q12.2)
RORB (9q21.13) / PISD (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)PISD   8999
Cards
Entrez_Gene (NCBI)PISD  23761  phosphatidylserine decarboxylase
AliasesDJ858B16; PSD; PSDC; PSSC; 
dJ858B16.2
GeneCards (Weizmann)PISD
Ensembl hg19 (Hinxton)ENSG00000241878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241878 [Gene_View]  chr22:31618491-31662564 [Contig_View]  PISD [Vega]
ICGC DataPortalENSG00000241878
TCGA cBioPortalPISD
AceView (NCBI)PISD
Genatlas (Paris)PISD
WikiGenes23761
SOURCE (Princeton)PISD
Genetics Home Reference (NIH)PISD
Genomic and cartography
GoldenPath hg38 (UCSC)PISD  -     chr22:31618491-31662564 -  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PISD  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblPISD - 22q12.2 [CytoView hg19]  PISD - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIPISD [Mapview hg19]  PISD [Mapview hg38]
OMIM612770   
Gene and transcription
Genbank (Entrez)AF035304 AF086277 AK298474 AL050371 AM393633
RefSeq transcript (Entrez)NM_001326411 NM_001326412 NM_001326413 NM_001326414 NM_001326415 NM_001326416 NM_001326417 NM_001326418 NM_001326419 NM_001326420 NM_001326421 NM_014338 NM_178022
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PISD
Cluster EST : UnigeneHs.732339 [ NCBI ]
CGAP (NCI)Hs.732339
Alternative Splicing GalleryENSG00000241878
Gene ExpressionPISD [ NCBI-GEO ]   PISD [ EBI - ARRAY_EXPRESS ]   PISD [ SEEK ]   PISD [ MEM ]
Gene Expression Viewer (FireBrowse)PISD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23761
GTEX Portal (Tissue expression)PISD
Human Protein AtlasENSG00000241878-PISD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UG56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UG56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UG56
Splice isoforms : SwissVarQ9UG56
PhosPhoSitePlusQ9UG56
Domains : Interpro (EBI)PS_Dcarbxylase    PSD    PSD_type1_euk   
Domain families : Pfam (Sanger)PS_Dcarbxylase (PF02666)   
Domain families : Pfam (NCBI)pfam02666   
Conserved Domain (NCBI)PISD
DMDM Disease mutations23761
Blocks (Seattle)PISD
SuperfamilyQ9UG56
Human Protein Atlas [tissue]ENSG00000241878-PISD [tissue]
Peptide AtlasQ9UG56
HPRD17854
IPIIPI00003827   IPI00937891   IPI00852651   IPI00514470   IPI00643648   IPI00853502   IPI00852590   IPI00924747   
Protein Interaction databases
DIP (DOE-UCLA)Q9UG56
IntAct (EBI)Q9UG56
FunCoupENSG00000241878
BioGRIDPISD
STRING (EMBL)PISD
ZODIACPISD
Ontologies - Pathways
QuickGOQ9UG56
Ontology : AmiGOphosphatidylserine decarboxylase activity  nucleus  mitochondrial inner membrane  phospholipid biosynthetic process  integral component of membrane  
Ontology : EGO-EBIphosphatidylserine decarboxylase activity  nucleus  mitochondrial inner membrane  phospholipid biosynthetic process  integral component of membrane  
Pathways : KEGGGlycerophospholipid metabolism   
NDEx NetworkPISD
Atlas of Cancer Signalling NetworkPISD
Wikipedia pathwaysPISD
Orthology - Evolution
OrthoDB23761
GeneTree (enSembl)ENSG00000241878
Phylogenetic Trees/Animal Genes : TreeFamPISD
HOVERGENQ9UG56
HOGENOMQ9UG56
Homologs : HomoloGenePISD
Homology/Alignments : Family Browser (UCSC)PISD
Gene fusions - Rearrangements
Fusion : MitelmanPISD/RBL1 [22q12.2/20q11.23]  
Fusion : MitelmanRBL1/PISD [20q11.23/22q12.2]  [t(20;22)(q11;q12)]  
Tumor Fusion PortalPISD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPISD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PISD
dbVarPISD
ClinVarPISD
1000_GenomesPISD 
Exome Variant ServerPISD
ExAC (Exome Aggregation Consortium)ENSG00000241878
GNOMAD BrowserENSG00000241878
Genetic variants : HAPMAP23761
Genomic Variants (DGV)PISD [DGVbeta]
DECIPHERPISD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPISD 
Mutations
ICGC Data PortalPISD 
TCGA Data PortalPISD 
Broad Tumor PortalPISD
OASIS PortalPISD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPISD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPISD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PISD
DgiDB (Drug Gene Interaction Database)PISD
DoCM (Curated mutations)PISD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PISD (select a term)
intoGenPISD
Cancer3DPISD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612770   
Orphanet
DisGeNETPISD
MedgenPISD
Genetic Testing Registry PISD
NextProtQ9UG56 [Medical]
TSGene23761
GENETestsPISD
Target ValidationPISD
Huge Navigator PISD [HugePedia]
snp3D : Map Gene to Disease23761
BioCentury BCIQPISD
ClinGenPISD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23761
Chemical/Pharm GKB GenePA33333
Clinical trialPISD
Miscellaneous
canSAR (ICR)PISD (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePISD
EVEXPISD
GoPubMedPISD
iHOPPISD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:28:53 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.