Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PITHD1 (PITH domain containing 1)

Identity

Alias_namesC1orf128
chromosome 1 open reading frame 128
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
Alias_symbol (synonym)HT014
TXNL1CL
Other alias
HGNC (Hugo) PITHD1
LocusID (NCBI) 57095
Atlas_Id 40892
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 23778386 and ends at 23788232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYH9 (22q12.3) / PITHD1 (1p36.11)PITHD1 (1p36.11) / TPCN1 (12q24.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PITHD1   25022
Cards
Entrez_Gene (NCBI)PITHD1  57095  PITH domain containing 1
AliasesC1orf128; HT014; TXNL1CL
GeneCards (Weizmann)PITHD1
Ensembl hg19 (Hinxton)ENSG00000057757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000057757 [Gene_View]  chr1:23778386-23788232 [Contig_View]  PITHD1 [Vega]
ICGC DataPortalENSG00000057757
TCGA cBioPortalPITHD1
AceView (NCBI)PITHD1
Genatlas (Paris)PITHD1
WikiGenes57095
SOURCE (Princeton)PITHD1
Genetics Home Reference (NIH)PITHD1
Genomic and cartography
GoldenPath hg38 (UCSC)PITHD1  -     chr1:23778386-23788232 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PITHD1  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblPITHD1 - 1p36.11 [CytoView hg19]  PITHD1 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIPITHD1 [Mapview hg19]  PITHD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF218024 AF221595 AF271784 AK296662 AK310330
RefSeq transcript (Entrez)NM_020362
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PITHD1
Cluster EST : UnigeneHs.31819 [ NCBI ]
CGAP (NCI)Hs.31819
Alternative Splicing GalleryENSG00000057757
Gene ExpressionPITHD1 [ NCBI-GEO ]   PITHD1 [ EBI - ARRAY_EXPRESS ]   PITHD1 [ SEEK ]   PITHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PITHD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57095
GTEX Portal (Tissue expression)PITHD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZP4
Splice isoforms : SwissVarQ9GZP4
PhosPhoSitePlusQ9GZP4
Domaine pattern : Prosite (Expaxy)PITH (PS51532)   
Domains : Interpro (EBI)Galactose-bd-like    PITH_dom   
Domain families : Pfam (Sanger)PITH (PF06201)   
Domain families : Pfam (NCBI)pfam06201   
Conserved Domain (NCBI)PITHD1
DMDM Disease mutations57095
Blocks (Seattle)PITHD1
SuperfamilyQ9GZP4
Human Protein AtlasENSG00000057757
Peptide AtlasQ9GZP4
HPRD13717
IPIIPI00015351   IPI00643524   IPI00910270   IPI00643061   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZP4
IntAct (EBI)Q9GZP4
FunCoupENSG00000057757
BioGRIDPITHD1
STRING (EMBL)PITHD1
ZODIACPITHD1
Ontologies - Pathways
QuickGOQ9GZP4
Ontology : AmiGOnucleus  cellular response to DNA damage stimulus  
Ontology : EGO-EBInucleus  cellular response to DNA damage stimulus  
NDEx NetworkPITHD1
Atlas of Cancer Signalling NetworkPITHD1
Wikipedia pathwaysPITHD1
Orthology - Evolution
OrthoDB57095
GeneTree (enSembl)ENSG00000057757
Phylogenetic Trees/Animal Genes : TreeFamPITHD1
HOVERGENQ9GZP4
HOGENOMQ9GZP4
Homologs : HomoloGenePITHD1
Homology/Alignments : Family Browser (UCSC)PITHD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPITHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PITHD1
dbVarPITHD1
ClinVarPITHD1
1000_GenomesPITHD1 
Exome Variant ServerPITHD1
ExAC (Exome Aggregation Consortium)PITHD1 (select the gene name)
Genetic variants : HAPMAP57095
Genomic Variants (DGV)PITHD1 [DGVbeta]
DECIPHERPITHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPITHD1 
Mutations
ICGC Data PortalPITHD1 
TCGA Data PortalPITHD1 
Broad Tumor PortalPITHD1
OASIS PortalPITHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPITHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPITHD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PITHD1
DgiDB (Drug Gene Interaction Database)PITHD1
DoCM (Curated mutations)PITHD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PITHD1 (select a term)
intoGenPITHD1
Cancer3DPITHD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPITHD1
Genetic Testing Registry PITHD1
NextProtQ9GZP4 [Medical]
TSGene57095
GENETestsPITHD1
Target ValidationPITHD1
Huge Navigator PITHD1 [HugePedia]
snp3D : Map Gene to Disease57095
BioCentury BCIQPITHD1
ClinGenPITHD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57095
Chemical/Pharm GKB GenePA142672446
Clinical trialPITHD1
Miscellaneous
canSAR (ICR)PITHD1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePITHD1
EVEXPITHD1
GoPubMedPITHD1
iHOPPITHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:10:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.