Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PITPNB (phosphatidylinositol transfer protein, beta)

Identity

Other namesPI-TP-beta
PtdInsTP
VIB1B
HGNC (Hugo) PITPNB
LocusID (NCBI) 23760
Location 22q12.1
Location_base_pair Starts at 28247657 and ends at 28315255 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PITPNB   9002
Entrez_Gene (NCBI)PITPNB  23760  phosphatidylinositol transfer protein, beta
Cards
GeneCards (Weizmann)PITPNB
Ensembl (Hinxton)ENSG00000180957 [Gene_View]  chr22:28247657-28315255 [Contig_View]  PITPNB [Vega]
AceView (NCBI)PITPNB
Genatlas (Paris)PITPNB
SOURCE (Stanford)NM_012399
Genomic and cartography
GoldenPath (UCSC)PITPNB  -  22q12.1   chr22:28247657-28315255 -  22q12.1   [Description]    (hg19-Feb_2009)
EnsemblPITPNB - 22q12.1 [CytoView]
Mapping of homologs : NCBIPITPNB [Mapview]
OMIM606876   
Gene and transcription
Genbank (Entrez)AK123384 AK302367 AK313064 BC018704 BC031427
RefSeq transcript (SRS)NM_012399
RefSeq transcript (Entrez)NM_012399
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)PITPNB
Cluster EST : UnigeneHs.705323 [ SRS ] Hs.705323 [ NCBI ]
CGAP (NCI)Hs.705323
Alternative Splicing : Fast-db (Paris)GSHG0020279
Alternative Splicing GalleryENSG00000180957
Gene ExpressionPITPNB [ NCBI-GEO ]   PITPNB [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48739 (SRS) P48739 (Uniprot)
NextProtP48739
With graphics : InterProP48739
Splice isoforms : SwissVarP48739(Swissvar)
Domains : Interpro (SRS)PI_transfer    START-like_dom   
Domains : Interpro (EBI)PI_transfer    START-like_dom   
Related proteins : CluSTrP48739
Domain families : Pfam (SRS)IP_trans (PF02121)   
Domain families : Pfam (Sanger)IP_trans (PF02121)   
Domain families : Pfam (NCBI)pfam02121   
DMDM23760
Blocks (Seattle)P48739
Human Protein AtlasENSG00000180957
HPRD06044
IPIIPI00334907   IPI01014285   IPI00395939   IPI00878839   IPI00917134   IPI00917005   
Protein Interaction databases
DIP (DOE-UCLA)P48739
IntAct (EBI)P48739
FunCoupENSG00000180957
REACTOMEPITPNB
Protein Interaction Database23760
BioGRIDPITPNB
InParanoidP48739
Interologous Interaction database P48739
IntegromeDBPITPNB
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PITPNB
SNP (GeneSNP Utah)PITPNB
SNP : HGBasePITPNB
Genetic variants : HAPMAPPITPNB
Somatic Mutations in Cancer : COSMICPITPNB 
CONAN: Copy Number AnalysisPITPNB 
Mutations and Diseases : HGMDPITPNB
OMIM606876   
GENETests606876   
Disease Genetic AssociationPITPNB
Huge Navigator PITPNB [HugePedia]  PITPNB [HugeCancerGEM]
Genomic VariantsPITPNB  PITPNB [DGVbeta]
snp3D : Map Gene to Disease23760
General knowledge
Homologs : HomoloGenePITPNB
Homology/Alignments : Family Browser (UCSC)PITPNB
Phylogenetic Trees/Animal Genes : TreeFamPITPNB
Chemical/Protein Interactions : CTD23760
Chemical/Pharm GKB GenePA33336
Clinical trialPITPNB
Cancer Resource (Charite)ENSG00000180957
Ontology : AmiGOGolgi membrane  in utero embryonic development  endoplasmic reticulum membrane  lipid metabolic process  phospholipid metabolic process  lipid binding  phosphatidylinositol transporter activity  phospholipid transport  small molecule metabolic process  glycerophospholipid biosynthetic process  
Ontology : EGO-EBIGolgi membrane  in utero embryonic development  endoplasmic reticulum membrane  lipid metabolic process  phospholipid metabolic process  lipid binding  phosphatidylinositol transporter activity  phospholipid transport  small molecule metabolic process  glycerophospholipid biosynthetic process  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGenePITPNB
iHOPPITPNB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:28 CEST 2013
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