Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PITPNC1 (phosphatidylinositol transfer protein, cytoplasmic 1)

Identity

Other namesM-RDGB-beta
MRDGBbeta
RDGB-BETA
RDGBB
RDGBB1
HGNC (Hugo) PITPNC1
LocusID (NCBI) 26207
Location 17q24.2
Location_base_pair Starts at 65373397 and ends at 65693379 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PITPNC1   21045
Entrez_Gene (NCBI)PITPNC1  26207  phosphatidylinositol transfer protein, cytoplasmic 1
Cards
GeneCards (Weizmann)PITPNC1
Ensembl (Hinxton)ENSG00000154217 [Gene_View]  chr17:65373397-65693379 [Contig_View]  PITPNC1 [Vega]
AceView (NCBI)PITPNC1
Genatlas (Paris)PITPNC1
SOURCE (Stanford)NM_012417 NM_181671
Genomic and cartography
GoldenPath (UCSC)PITPNC1  -  17q24.2   chr17:65373397-65693379 +  17q24.2   [Description]    (hg19-Feb_2009)
EnsemblPITPNC1 - 17q24.2 [CytoView]
Mapping of homologs : NCBIPITPNC1 [Mapview]
OMIM605134   
Gene and transcription
Genbank (Entrez)AF171102 AI126821 AK094724 AK290838 AK307138
RefSeq transcript (SRS)NM_012417 NM_181671
RefSeq transcript (Entrez)NM_012417 NM_181671
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
Consensus coding sequences : CCDS (NCBI)PITPNC1
Cluster EST : UnigeneHs.591185 [ SRS ] Hs.591185 [ NCBI ]
CGAP (NCI)Hs.591185
Alternative Splicing : Fast-db (Paris)GSHG0012745
Alternative Splicing GalleryENSG00000154217
Gene ExpressionPITPNC1 [ NCBI-GEO ]   PITPNC1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKF7 (SRS) Q9UKF7 (Uniprot)
NextProtQ9UKF7
With graphics : InterProQ9UKF7
Splice isoforms : SwissVarQ9UKF7(Swissvar)
Domains : Interpro (SRS)PI_transfer    START-like_dom   
Domains : Interpro (EBI)PI_transfer    START-like_dom   
Related proteins : CluSTrQ9UKF7
Domain families : Pfam (SRS)IP_trans (PF02121)   
Domain families : Pfam (Sanger)IP_trans (PF02121)   
Domain families : Pfam (NCBI)pfam02121   
DMDM26207
Blocks (Seattle)Q9UKF7
Human Protein AtlasENSG00000154217
HPRD05504
IPIIPI00018284   IPI00063187   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKF7
IntAct (EBI)Q9UKF7
FunCoupENSG00000154217
REACTOMEPITPNC1
Protein Interaction Database26207
BioGRIDPITPNC1
InParanoidQ9UKF7
Interologous Interaction database Q9UKF7
IntegromeDBPITPNC1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PITPNC1
SNP (GeneSNP Utah)PITPNC1
SNP : HGBasePITPNC1
Genetic variants : HAPMAPPITPNC1
Somatic Mutations in Cancer : COSMICPITPNC1 
CONAN: Copy Number AnalysisPITPNC1 
Mutations and Diseases : HGMDPITPNC1
OMIM605134   
GENETests605134   
Disease Genetic AssociationPITPNC1
Huge Navigator PITPNC1 [HugePedia]  PITPNC1 [HugeCancerGEM]
Genomic VariantsPITPNC1  PITPNC1 [DGVbeta]
ClinVarPITPNC1
snp3D : Map Gene to Disease26207
General knowledge
Homologs : HomoloGenePITPNC1
Homology/Alignments : Family Browser (UCSC)PITPNC1
Phylogenetic Trees/Animal Genes : TreeFamPITPNC1
Chemical/Protein Interactions : CTD26207
Chemical/Pharm GKB GenePA128394642
Clinical trialPITPNC1
Cancer Resource (Charite)ENSG00000154217
Ontology : AmiGOprotein binding  cytoplasm  signal transduction  lipid binding  phosphatidylinositol transporter activity  
Ontology : EGO-EBIprotein binding  cytoplasm  signal transduction  lipid binding  phosphatidylinositol transporter activity  
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
PubGenePITPNC1
iHOPPITPNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:40 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.