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PITPNM1 (phosphatidylinositol transfer protein, membrane-associated 1)

Identity

Other namesDRES9
NIR2
PITPNM
RDGB
RDGB1
RDGBA
RDGBA1
Rd9
HGNC (Hugo) PITPNM1
LocusID (NCBI) 9600
Location 11q13.2
Location_base_pair Starts at 67259239 and ends at 67272843 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PITPNM1   9003
Entrez_Gene (NCBI)PITPNM1  9600  phosphatidylinositol transfer protein, membrane-associated 1
Cards
GeneCards (Weizmann)PITPNM1
Ensembl (Hinxton)ENSG00000110697 [Gene_View]  chr11:67259239-67272843 [Contig_View]  PITPNM1 [Vega]
AceView (NCBI)PITPNM1
Genatlas (Paris)PITPNM1
SOURCE (Stanford)NM_001130848 NM_004910
Genomic and cartography
GoldenPath (UCSC)PITPNM1  -  11q13.2   chr11:67259239-67272843 -  11q13.2   [Description]    (hg19-Feb_2009)
EnsemblPITPNM1 - 11q13.2 [CytoView]
Mapping of homologs : NCBIPITPNM1 [Mapview]
OMIM608794   
Gene and transcription
Genbank (Entrez)AA465501 AF334584 AK126944 AK312886 AY429102
RefSeq transcript (SRS)NM_001130848 NM_004910
RefSeq transcript (Entrez)NM_001130848 NM_004910
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838025 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838025 NW_004078072
Consensus coding sequences : CCDS (NCBI)PITPNM1
Cluster EST : UnigeneHs.372295 [ SRS ] Hs.372295 [ NCBI ]
CGAP (NCI)Hs.372295
Alternative Splicing : Fast-db (Paris)GSHG0005948
Alternative Splicing GalleryENSG00000110697
Gene ExpressionPITPNM1 [ NCBI-GEO ]   PITPNM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00562 (SRS) O00562 (Uniprot)
NextProtO00562
With graphics : InterProO00562
Splice isoforms : SwissVarO00562(Swissvar)
Domaine pattern : Prosite (SRS)DDHD (PS51043)   
Domaine pattern : Prosite (Expaxy)DDHD (PS51043)   
Domains : Interpro (SRS)DDHD    HAD-like_dom    LNS2    PI_transfer    START-like_dom   
Domains : Interpro (EBI)DDHD    HAD-like_dom    LNS2    PI_transfer    START-like_dom   
Related proteins : CluSTrO00562
Domain families : Pfam (SRS)DDHD (PF02862)    IP_trans (PF02121)    LNS2 (PF08235)   
Domain families : Pfam (Sanger)DDHD (PF02862)    IP_trans (PF02121)    LNS2 (PF08235)   
Domain families : Pfam (NCBI)pfam02862    pfam02121    pfam08235   
Domain families : Smart (EMBL)LNS2 (SM00775)  
DMDM9600
Blocks (Seattle)O00562
Human Protein AtlasENSG00000110697
HPRD07497
IPIIPI00307758   IPI00791675   IPI00979391   IPI00978709   IPI00983653   IPI00976564   
Protein Interaction databases
DIP (DOE-UCLA)O00562
IntAct (EBI)O00562
FunCoupENSG00000110697
REACTOMEPITPNM1
Protein Interaction Database9600
BioGRIDPITPNM1
InParanoidO00562
Interologous Interaction database O00562
IntegromeDBPITPNM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PITPNM1
SNP (GeneSNP Utah)PITPNM1
SNP : HGBasePITPNM1
Genetic variants : HAPMAPPITPNM1
Somatic Mutations in Cancer : COSMICPITPNM1 
CONAN: Copy Number AnalysisPITPNM1 
Mutations and Diseases : HGMDPITPNM1
OMIM608794   
GENETests608794   
Disease Genetic AssociationPITPNM1
Huge Navigator PITPNM1 [HugePedia]  PITPNM1 [HugeCancerGEM]
Genomic VariantsPITPNM1  PITPNM1 [DGVbeta]
ClinVarPITPNM1
snp3D : Map Gene to Disease9600
General knowledge
Homologs : HomoloGenePITPNM1
Homology/Alignments : Family Browser (UCSC)PITPNM1
Phylogenetic Trees/Animal Genes : TreeFamPITPNM1
Chemical/Protein Interactions : CTD9600
Chemical/Pharm GKB GenePA33337
Clinical trialPITPNM1
Cancer Resource (Charite)ENSG00000110697
Ontology : AmiGOendoplasmic reticulum membrane  lipid particle  lipid metabolic process  brain development  phototransduction  phosphatidylinositol transporter activity  protein transport  membrane  midbody  cleavage furrow  Golgi cisterna membrane  metal ion binding  
Ontology : EGO-EBIendoplasmic reticulum membrane  lipid particle  lipid metabolic process  brain development  phototransduction  phosphatidylinositol transporter activity  protein transport  membrane  midbody  cleavage furrow  Golgi cisterna membrane  metal ion binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGenePITPNM1
iHOPPITPNM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:54:08 CEST 2013
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