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PITPNM2 (phosphatidylinositol transfer protein, membrane-associated 2)

Identity

Other namesNIR-3
NIR3
RDGB2
RDGBA2
HGNC (Hugo) PITPNM2
LocusID (NCBI) 57605
Location 12q24.31
Location_base_pair Starts at 123468027 and ends at 123594975 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PITPNM2   21044
Entrez_Gene (NCBI)PITPNM2  57605  phosphatidylinositol transfer protein, membrane-associated 2
Cards
GeneCards (Weizmann)PITPNM2
Ensembl (Hinxton)ENSG00000090975 [Gene_View]  chr12:123468027-123594975 [Contig_View]  PITPNM2 [Vega]
AceView (NCBI)PITPNM2
Genatlas (Paris)PITPNM2
SOURCE (Stanford)NM_020845
Genomic and cartography
GoldenPath (UCSC)PITPNM2  -  12q24.31   chr12:123468027-123594975 -  12q24.31   [Description]    (hg19-Feb_2009)
EnsemblPITPNM2 - 12q24.31 [CytoView]
Mapping of homologs : NCBIPITPNM2 [Mapview]
OMIM608920   
Gene and transcription
Genbank (Entrez)AB040890 AF334585 AK026156 AL133612 BC025360
RefSeq transcript (SRS)NM_020845
RefSeq transcript (Entrez)NM_020845
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009755 NW_001838064 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009755 NW_001838064 NW_004078075
Consensus coding sequences : CCDS (NCBI)PITPNM2
Cluster EST : UnigeneHs.272759 [ SRS ] Hs.272759 [ NCBI ]
CGAP (NCI)Hs.272759
Alternative Splicing : Fast-db (Paris)GSHG0007883
Alternative Splicing GalleryENSG00000090975
Gene ExpressionPITPNM2 [ NCBI-GEO ]   PITPNM2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ72 (SRS) Q9BZ72 (Uniprot)
NextProtQ9BZ72
With graphics : InterProQ9BZ72
Splice isoforms : SwissVarQ9BZ72(Swissvar)
Domaine pattern : Prosite (SRS)DDHD (PS51043)   
Domaine pattern : Prosite (Expaxy)DDHD (PS51043)   
Domains : Interpro (SRS)DDHD    HAD-like_dom    LNS2    PI_transfer    START-like_dom   
Domains : Interpro (EBI)DDHD    HAD-like_dom    LNS2    PI_transfer    START-like_dom   
Related proteins : CluSTrQ9BZ72
Domain families : Pfam (SRS)DDHD (PF02862)    IP_trans (PF02121)    LNS2 (PF08235)   
Domain families : Pfam (Sanger)DDHD (PF02862)    IP_trans (PF02121)    LNS2 (PF08235)   
Domain families : Pfam (NCBI)pfam02862    pfam02121    pfam08235   
Domain families : Smart (EMBL)LNS2 (SM00775)  
DMDM57605
Blocks (Seattle)Q9BZ72
Human Protein AtlasENSG00000090975
HPRD08335
IPIIPI00097494   IPI00155134   IPI00747418   IPI00975597   IPI01009147   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ72
IntAct (EBI)Q9BZ72
FunCoupENSG00000090975
REACTOMEPITPNM2
Protein Interaction Database57605
BioGRIDPITPNM2
InParanoidQ9BZ72
Interologous Interaction database Q9BZ72
IntegromeDBPITPNM2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PITPNM2
SNP (GeneSNP Utah)PITPNM2
SNP : HGBasePITPNM2
Genetic variants : HAPMAPPITPNM2
Somatic Mutations in Cancer : COSMICPITPNM2 
CONAN: Copy Number AnalysisPITPNM2 
Mutations and Diseases : HGMDPITPNM2
OMIM608920   
GENETests608920   
Disease Genetic AssociationPITPNM2
Huge Navigator PITPNM2 [HugePedia]  PITPNM2 [HugeCancerGEM]
Genomic VariantsPITPNM2  PITPNM2 [DGVbeta]
snp3D : Map Gene to Disease57605
General knowledge
Homologs : HomoloGenePITPNM2
Homology/Alignments : Family Browser (UCSC)PITPNM2
Phylogenetic Trees/Animal Genes : TreeFamPITPNM2
Chemical/Protein Interactions : CTD57605
Chemical/Pharm GKB GenePA134963002
Clinical trialPITPNM2
Cancer Resource (Charite)ENSG00000090975
Ontology : AmiGOcalcium ion binding  transport  metabolic process  lipid binding  endomembrane system  integral to membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIcalcium ion binding  transport  metabolic process  lipid binding  endomembrane system  integral to membrane  intracellular membrane-bounded organelle  
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGenePITPNM2
iHOPPITPNM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:58 CEST 2013
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